Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C20
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    24   0.70 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   5.0  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    21   5.0  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   5.0  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   5.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   5.0  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    21   6.6  
AY052623-1|AAL15471.1|  101|Tribolium castaneum kynurenine 3-mon...    21   6.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   8.7  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 65  RPKKVGITGKSGTRYGASLRKMVKKLEVTQHAKYTCSFCGK 187
           +PK+  I      ++  S   ++ +   T    Y+C  CGK
Sbjct: 75  KPKRQFICKYCNRQFTKSYNLLIHERTHTDERPYSCDICGK 115


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 123 VKWSKSWK*PNTQSI 167
           +KW K  K PNT+++
Sbjct: 286 MKWKKDNKLPNTKNV 300


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +3

Query: 198 NVLVSASGLVSDARGL*QEELGYSPLLLPHHADLLSGGYVK*SNLN 335
           +V+V   GLV     +   + GY   L  +  D+ +  + +  ++N
Sbjct: 8   SVIVVGGGLVGSLCAIFMAKRGYHVTLFEYREDIRTAKFARGRSIN 53


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +3

Query: 198 NVLVSASGLVSDARGL*QEELGYSPLLLPHHADLLSGGYVK*SNLN 335
           +V+V   GLV     +   + GY   L  +  D+ +  + +  ++N
Sbjct: 8   SVIVVGGGLVGSLCAIFMAKRGYHVTLFEYREDIRTAKFARGRSIN 53



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 188 PYHKMSKYTLRVGLLPAF*PFY 123
           PYH  SK+ L      A  PFY
Sbjct: 291 PYHVGSKFLLIGDAAHAMVPFY 312


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +3

Query: 198 NVLVSASGLVSDARGL*QEELGYSPLLLPHHADLLSGGYVK*SNLN 335
           +V+V   GLV     +   + GY   L  +  D+ +  + +  ++N
Sbjct: 8   SVIVVGGGLVGSLCAIFMAKRGYHVTLFEYREDIRTAKFARGRSIN 53



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 188 PYHKMSKYTLRVGLLPAF*PFY 123
           PYH  SK+ L      A  PFY
Sbjct: 291 PYHVGSKFLLIGDAAHAMVPFY 312


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 123 VKWSKSWK*PNTQSI 167
           +KW K  K PNT+++
Sbjct: 286 MKWKKDNKLPNTKNV 300


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 188 PYHKMSKYTLRVGLLPAF*PFY 123
           PYH  SK+ L      A  PFY
Sbjct: 58  PYHVGSKFLLIGDAAHAMVPFY 79


>AY052623-1|AAL15471.1|  101|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 101

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 188 PYHKMSKYTLRVGLLPAF*PFY 123
           PYH  SK+ L      A  PFY
Sbjct: 73  PYHVGSKFLLIGDAAHAMVPFY 94


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 25  VNFCLGSVSQNG 60
           VNFC  S  QNG
Sbjct: 339 VNFCATSPCQNG 350


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,225
Number of Sequences: 336
Number of extensions: 1986
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)