Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_C17
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 139 3e-34
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 37 0.004
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 33 0.057
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 29 0.94
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.8
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 3.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.0
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 6.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.6
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 26 6.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 8.7
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 139 bits (337), Expect = 3e-34
Identities = 70/164 (42%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Frame = +1
Query: 253 EYEKAQQRSLNDPEGFWGEVGSEL-EWTKPWDRVLDDS-NAPFTKWWVGGEMSVCYNAVD 426
EY++ + S+NDP FWG + ++ W K + V+ S + + W+ G +S CYN VD
Sbjct: 34 EYKRMYEESINDPSTFWGNMARDMMTWDKQFSTVVQGSIDKADSAWFADGAISPCYNLVD 93
Query: 427 RHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLV 606
RH + R + AL++++ + R I+Y EL VS+ AG L ++GV G RV IYMP++
Sbjct: 94 RHAI-ARPDAVALIYEADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMI 152
Query: 607 PEAIIAMLATNRIGAIHSVVFGGFAARELRTRIEHAEPTVIIXA 738
PE IIAMLA R+GAIHSV+F GF+A + R+ +E VII A
Sbjct: 153 PETIIAMLAIVRLGAIHSVIFAGFSAESVADRVNDSECKVIITA 196
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/98 (26%), Positives = 47/98 (47%)
Frame = +1
Query: 454 QFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLVPEAIIAMLA 633
+FAL + +R ++Y+EL ++ ++LA L + G G+ + +Y EA I+MLA
Sbjct: 2737 EFALDINQDSVQLIR-LTYSELNERANKLAHNLKSYGFRVGSIIAVYFDKCIEAFISMLA 2795
Query: 634 TNRIGAIHSVVFGGFAARELRTRIEHAEPTVIIXASCG 747
+ G + +A R R + T ++ S G
Sbjct: 2796 ILKAGCCFLAL--DVSAPTERIRYIVTDSTAVLVMSTG 2831
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 32.7 bits (71), Expect = 0.057
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 502 ISYNELKDQVSRLAGKLTTLGVSKGARVLIYMP 600
+S+N++ D+ R AG L LG++KG + +Y P
Sbjct: 97 LSFNDIYDKALRYAGALRKLGLNKGDKFELYAP 129
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 747 PATGGYDDRWLSVFDPRS*FPRSETSKYNRVNGADTIGSEHSYNS 613
P+ Y ++ + PR+ +Y+ NG T G+ HSY S
Sbjct: 277 PSQSHYQTQFQASVVPRTDVINEPPRRYSHANGVTTSGTTHSYTS 321
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 389 THHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGS 285
+HH V L S +R H +H+ S P S + S
Sbjct: 307 SHHNVRTTLFSDDSRFHSKIHTHSTPPSQMYSAAS 341
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 499 KISYNELKDQVSRLAGKLTTLGVSKGARV 585
K SYN LK Q S L GK++ + + G R+
Sbjct: 69 KNSYNSLKQQHSNLLGKVSGIKSTLGERL 97
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 401 ISPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFNDLCW 267
I+ P+HH VN S +H++S SPQ+ SF+ W
Sbjct: 8 INKPSHHNVN-----YNGNSFNSIHATSFGMSPQSWGNSFSGQAW 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 398 SPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFND 276
S P N + S+ T S HS P SP +PS ++ D
Sbjct: 280 SQPPRPPTNASTRSTGTSS-SMAHSYDSPPSPSSPSDAYGD 319
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 188 SSLIDDSNLLFSILLPTSFCWCILKP-KNEPKARNPKKLNIYFFQISIV 45
S L+ LLF LLP + W +K +++ RN K N +S+V
Sbjct: 4 SLLVPRRALLFGQLLPPKYSWYSVKRWQSQLTFRNKSKRNTNRIMLSVV 52
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.6
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Frame = -2
Query: 716 SACSILVLNSLAAKPPNTTE*MAPIRLVASIAIIASGTSGM*ISTRAPLLTPNVVSFPAR 537
++ S+ +SLA+ N+T +P + + S + +T + L + ++ S
Sbjct: 81 ASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLA 140
Query: 536 RET*SFSSL*EIFLTVSVSGES*TKANCSPLPLTTCRSTAL*HTDIS-PPTHHFVNGALL 360
+ + SSL T S S T + S P ++ S++L T S T + + L
Sbjct: 141 SSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSL 200
Query: 359 SSRTRSHGFVHSSSDPTSPQNPSGS 285
+S T S SS T+ N + S
Sbjct: 201 NS-TTSATATSSSLSSTAASNSATS 224
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 742 NWRX**PLAQRVRSSFLIPSQRNLQIQQSEWR 647
NWR Q V + P +RNL+I + WR
Sbjct: 135 NWRRNLAQLQDVEGFIVTPFERNLEIWRQLWR 166
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 191 LSSLIDDSNLLFSILLPTSFCWCILKP 111
L+S + + F+ +L T FCW +L P
Sbjct: 81 LASTLKQRVIFFTRVLLTFFCWTVLLP 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,734
Number of Sequences: 5004
Number of extensions: 68950
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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