Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_C14
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 133 2e-32
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 133 2e-32
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 129 5e-31
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 118 1e-27
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 108 9e-25
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 107 2e-24
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 99 3e-22
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 96 4e-21
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 84 2e-17
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 81 1e-16
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 80 4e-16
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 77 2e-15
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 77 2e-15
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 76 4e-15
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 76 4e-15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 73 3e-14
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 73 3e-14
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 73 6e-14
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 36 0.004
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 34 0.018
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 33 0.031
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 29 0.51
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 27 2.7
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 26 4.8
SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 4.8
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 6.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.3
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 133 bits (322), Expect = 2e-32
Identities = 61/142 (42%), Positives = 92/142 (64%)
Frame = +3
Query: 291 KNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDT 470
K LLK++ILG+ GVGK+ +M+++++ F TIG +F+ K + V+ K TLQ+WDT
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDT 64
Query: 471 AGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVV 650
AGQERF+SL FYRG+D C+L Y +++ SF + W +EFL A N E +PF+++
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNP-ETFPFILL 123
Query: 651 GNKSDVPSKDREVTHDQLKQWC 716
GNK DV + R V+ + +C
Sbjct: 124 GNKVDVEEQKRMVSKSKALAFC 145
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 133 bits (322), Expect = 2e-32
Identities = 60/142 (42%), Positives = 91/142 (64%)
Frame = +3
Query: 291 KNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDT 470
K LK+VILGD GVGK+CLM++F++ F TIG +F+ K + V+ K TLQ+WDT
Sbjct: 5 KRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDT 64
Query: 471 AGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVV 650
AGQERF+SL FYRG+D C++ Y +++ SF++++ W EFL+ +PF++V
Sbjct: 65 AGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDEC--AFPFIIV 122
Query: 651 GNKSDVPSKDREVTHDQLKQWC 716
GN+ D + R V+ + +C
Sbjct: 123 GNQIDKDASKRAVSLHRALDYC 144
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 129 bits (311), Expect = 5e-31
Identities = 62/146 (42%), Positives = 93/146 (63%)
Frame = +3
Query: 282 NQNKNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQV 461
N + L K++++GD GVGKSCL+ RF + + + TIGV+F +T E+ GK LQ+
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQI 61
Query: 462 WDTAGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPF 641
WDTAGQERF+++ + +YRG+ I+ Y + D+ SFNN+K WL E YA G+ R
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA--VEGVNR--- 116
Query: 642 MVVGNKSDVPSKDREVTHDQLKQWCD 719
++VGNKSD+ K + V + K++ D
Sbjct: 117 LLVGNKSDMVDK-KVVEYSVAKEFAD 141
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 118 bits (283), Expect = 1e-27
Identities = 55/141 (39%), Positives = 91/141 (64%)
Frame = +3
Query: 300 LLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQ 479
L+K++++GD GVGKSCL+ RF + F TIG++F +TIE++GK+ LQ+WDTAGQ
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
Query: 480 ERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNK 659
ERF+++ T +YRG+ +L Y + D+ SF+N++ W + +A E +++GNK
Sbjct: 69 ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS-----ENVYKILIGNK 123
Query: 660 SDVPSKDREVTHDQLKQWCDD 722
D + R+V+ +Q + D+
Sbjct: 124 CDCEDQ-RQVSFEQGQALADE 143
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 108 bits (259), Expect = 9e-25
Identities = 52/123 (42%), Positives = 77/123 (62%)
Frame = +3
Query: 300 LLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQ 479
L K V++GD GVGKS L+ RF N F+ S TIGVEF + I ++ K+ Q+WDTAGQ
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69
Query: 480 ERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNK 659
ER++++ + +YRG+ ++ Y I +SSF+N+ WL E +A M+VGNK
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD-----SNIVIMLVGNK 124
Query: 660 SDV 668
+D+
Sbjct: 125 TDL 127
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 107 bits (257), Expect = 2e-24
Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Frame = +3
Query: 300 LLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVN----GKQYTLQVWD 467
L+KIV+ G G GKSCL+ RF+ N +DD HT+G++F ++ I V K+ LQ+WD
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWD 68
Query: 468 TAGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMV 647
TAGQE+F+S+ +YRG+ +L Y + ++ SF + WL++ A ++
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAP-----STICVVL 123
Query: 648 VGNKSDVPSKDREVTHDQLKQWCDD 722
G+KSD+ ++ R+V+ ++ ++C +
Sbjct: 124 AGSKSDLQNQ-RQVSTEEAAEFCSE 147
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 99 bits (238), Expect = 3e-22
Identities = 51/132 (38%), Positives = 83/132 (62%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQER 485
K+V LG+ VGK+ L++RF+ + FD+ TIG++F++KT+ + + LQ+WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 486 FKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNKSD 665
F+SL + R S V I+ Y I + +SF N + W+ + G + ++VGNK+D
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG-----DDVIIVLVGNKTD 127
Query: 666 VPSKDREVTHDQ 701
+ K R+VT ++
Sbjct: 128 LADK-RQVTQEE 138
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 96.3 bits (229), Expect = 4e-21
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVN-GKQYTLQVWDTAGQE 482
K+V+LGD VGKS L+ RF+ + FDD+ TIG F+ +T+ ++ L++WDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 483 RFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNKS 662
R+KSL +YR ++ I+ Y I +S K W+ E A E + GNK
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAP-----EGIVIALAGNKL 130
Query: 663 DVPSKDREV 689
D+ + R V
Sbjct: 131 DLAQERRAV 139
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 84.2 bits (199), Expect = 2e-17
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Frame = +3
Query: 276 RRNQNKNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNK-TIEVNGKQYT 452
+ T K+V++GDGG GK+CL+ F S F + T+ ++ T N K
Sbjct: 6 KSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIE 65
Query: 453 LQVWDTAGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNI-KMWLNEFLHYAGVKNGIE 629
L +WDTAGQE + LR Y S+V +L ++ID +S NN+ + W E H+
Sbjct: 66 LALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFC------P 119
Query: 630 RYPFMVVGNKSDVPSKDREVT 692
R P ++VG K+D+ KDR T
Sbjct: 120 RTPIVLVGLKADL-RKDRNAT 139
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 81.4 bits (192), Expect = 1e-16
Identities = 46/124 (37%), Positives = 72/124 (58%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQER 485
K+V++GDGGVGKS L + I +HF D TI + K E++G+ L V DTAGQE
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQEE 68
Query: 486 FKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNKSD 665
+ ++R + R + +L Y I RSSF+ I + + L VK+ + +P ++V NK D
Sbjct: 69 YSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILR---VKDK-DTFPVVLVANKCD 124
Query: 666 VPSK 677
+ ++
Sbjct: 125 LEAE 128
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 79.8 bits (188), Expect = 4e-16
Identities = 46/134 (34%), Positives = 76/134 (56%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQER 485
+I +LG VGKS L +++ NHF + + TI F +K I+ G+++ ++ DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 486 FKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNKSD 665
+ L + G +L Y+I +SSF +K+ ++ L++ G E P +VVGNKSD
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGT----EWVPIVVVGNKSD 122
Query: 666 VPSKDREVTHDQLK 707
+ R VT ++ K
Sbjct: 123 L-HMQRAVTAEEGK 135
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 77.4 bits (182), Expect = 2e-15
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQER 485
K+VI+GDG GK+CL+ F F + T+ ++ +EV+G+ L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYV-ADVEVDGRHVELALWDTAGQED 66
Query: 486 FKSLRTPFYRGSDVCILAYAIDDRSSFNNI-KMWLNEFLHYAGVKNGIERYPFMVVGNKS 662
+ LR Y S V ++ +A+D S +N+ + W++E LH+ P ++V K+
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFC------SSLPILLVACKA 120
Query: 663 DV 668
D+
Sbjct: 121 DL 122
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 77.4 bits (182), Expect = 2e-15
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQER 485
K+VI+GDG GK+CL+ F F + T+ ++ +EV+G+ L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYV-ADVEVDGRHIELALWDTAGQED 66
Query: 486 FKSLRTPFYRGSDVCILAYAIDDRSSFNNI-KMWLNEFLHYAGVKNGIERYPFMVVGNKS 662
+ LR Y S V ++ +++D S +N+ + W++E LH+ P ++VG K
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFC------SNLPILLVGCKV 120
Query: 663 DVPSKDREV 689
D+ + + +
Sbjct: 121 DLRNDPKTI 129
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 76.2 bits (179), Expect = 4e-15
Identities = 43/135 (31%), Positives = 67/135 (49%)
Frame = +3
Query: 285 QNKNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVW 464
QN T K+V++GDGG GK+ + R ++ F+ T+GVE N + VW
Sbjct: 5 QNVPTF-KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVW 63
Query: 465 DTAGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFM 644
DTAGQE+ LR +Y I+ + + R ++ N+ W + + E P +
Sbjct: 64 DTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVC------ENIPIV 117
Query: 645 VVGNKSDVPSKDREV 689
+ GNK DV K+R+V
Sbjct: 118 LCGNKVDV--KERKV 130
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 76.2 bits (179), Expect = 4e-15
Identities = 30/103 (29%), Positives = 54/103 (52%)
Frame = +3
Query: 285 QNKNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVW 464
+ N +K+ ++GD +GK+ LM ++ FD+ S T+GV FM KTI + + T +W
Sbjct: 5 RKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIW 64
Query: 465 DTAGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNE 593
D GQ F ++ + + + + +S+ N+IK W +
Sbjct: 65 DLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQ 107
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 73.3 bits (172), Expect = 3e-14
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQER 485
K+V++GDG GK+ L+S F +F T+ +++ V+GK L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALWDTAGQEE 68
Query: 486 FKSLRTPFYRGSDVCILAYAIDDRSSFNNIK-MWLNEFLHYAGVKNGIERYPFMVVGNKS 662
++ LR Y + + ++ +AID S N+ W+ E + PF++VG K+
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEE------INTLCPNVPFILVGMKA 122
Query: 663 DVPS 674
D+ S
Sbjct: 123 DLRS 126
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 73.3 bits (172), Expect = 3e-14
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Frame = +3
Query: 282 NQNKNTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQV 461
++ K KIVILGDG GK+ L++ F +F TI +++ I V+G L +
Sbjct: 7 SKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSL 65
Query: 462 WDTAGQERFKSLRTPFYRGSDVCILAYAIDDRSSFNN-IKMWLNEFLHYAGVKNGIERYP 638
WDTAGQE + LR+ Y + V ++ +A+D R S N I WL E V +
Sbjct: 66 WDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPE------VSSNCPGVK 119
Query: 639 FMVVGNKSDVPSKDRE-VTHDQL 704
++V K D+ D E V H ++
Sbjct: 120 LVLVALKCDLRGADEEQVDHSKI 142
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 72.5 bits (170), Expect = 6e-14
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +3
Query: 303 LKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQE 482
+K V++GDG VGK+CL+ + +N F T+ + T+ + + YTL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYA-VTVMIGDEPYTLGLFDTAGQE 62
Query: 483 RFKSLRTPFYRGSDVCILAYAIDDRSSFNNIK-MWLNEFLHYAGVKNGIERYPFMVVGNK 659
+ LR Y +DV ++ +++ +SF N+K W E H+ G+ P ++VG +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC---PGV---PCLIVGTQ 116
Query: 660 SDV 668
D+
Sbjct: 117 IDL 119
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 36.3 bits (80), Expect = 0.004
Identities = 27/124 (21%), Positives = 57/124 (45%)
Frame = +3
Query: 303 LKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQE 482
++I+++G GK+ ++ + + TIG F +T+E +T VWD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYRNISFT--VWDVGGQD 72
Query: 483 RFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVGNKS 662
+ + L +++ + I +DR + L L+ +++ + +V NK
Sbjct: 73 KIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL----LLVFANKQ 128
Query: 663 DVPS 674
D+P+
Sbjct: 129 DLPN 132
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 34.3 bits (75), Expect = 0.018
Identities = 27/126 (21%), Positives = 57/126 (45%)
Frame = +3
Query: 294 NTLLKIVILGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTA 473
N ++I++LG GK+ ++ + N + T+G F +T+ K VWD
Sbjct: 19 NKEMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVG--FNVETVTY--KNIKFNVWDVG 73
Query: 474 GQERFKSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMVVG 653
GQ++ + L ++ G+ I D + + + L+ + +++ + +V+
Sbjct: 74 GQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCL----LLVLA 129
Query: 654 NKSDVP 671
NK D+P
Sbjct: 130 NKQDLP 135
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.5 bits (73), Expect = 0.031
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Frame = +3
Query: 306 KIVILGDGGVGKSCLMSRFISNHF-DDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQE 482
K++++G G GKS + S SN+ D ++ + + G L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLG-NLVLNLWDCGGQE 62
Query: 483 RF-----KSLRTPFYRGSDVCILAYAIDDRSSFNNIKMWLNEFLHYAGVKNGIERYPFMV 647
F + R +R V I + ++ R ++ + N A V N + F +
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRN--CLEATVANSPQARVFCL 120
Query: 648 VGNKSDVPSKD-REVTHDQLK 707
+ +K D+ +D R++ ++ K
Sbjct: 121 I-HKMDLVQEDLRDLVFEERK 140
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 29.5 bits (63), Expect = 0.51
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +3
Query: 348 LMSRFISNHFDDHSFHTIGV--EFMNKTI----EVNGKQYTLQVWDTA--GQERFKSLRT 503
L + ++H DHS + + EF + TI + NG + LQ +T G + ++L T
Sbjct: 56 LQAILTTHHHADHSGGNLNLKKEFPHVTIYGGSDQNGVSHVLQDKETLRIGNVQIEALHT 115
Query: 504 PFYRGSDVCILAYAIDDRSSF 566
P + +C A++ ++ + F
Sbjct: 116 PCHTRDSICFYAHSSNEHAVF 136
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 267 PPLFKLNQTLSNTETNFLLQQP 202
PP + Q++ NT +NFLL P
Sbjct: 295 PPFITIPQSIKNTNSNFLLSSP 316
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 624 IERYPFMVVGNKSDVPSKDREVTHDQLK 707
+ R PF+++GNK D P ++ D+LK
Sbjct: 119 LARVPFLILGNKIDAPG---AISEDELK 143
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 318 LGDGGVGKSCLMSRFISNHFDDHSFHTIGVEFMNKTIEVNGKQYTLQVWDTAGQERFKSL 497
LG + C+ S+ + N+ H +HT+ + + I+V+G L A + KSL
Sbjct: 80 LGGTCLNVGCIPSKALLNN--SHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKSL 137
>SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 476 PRKVQVAPDSILQRIRCMHT 535
PR + + D +LQRI+C T
Sbjct: 38 PRNISITVDRVLQRIQCTST 57
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 448 IHSRYGTRPAKKGSSRSG 501
+ +YG+RP+KK RSG
Sbjct: 850 VSGKYGSRPSKKKKKRSG 867
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 571 LLNELLSSIA*ASMHTSDPL*NGVRSDLNLSWPAVSHTWSVYCFPFTSMVLFMNSTPI 398
+LN + + +++TS P+ + S LN S P S T P TS + +STPI
Sbjct: 1013 VLNSSTAITSSTALNTSTPITSS--SVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 1068
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 571 LLNELLSSIA*ASMHTSDPL*NGVRSDLNLSWPAVSHTWSVYCFPFTSMVLFMNSTPI 398
+LN + + +++TS P+ + S LN S P S T P TS + +STPI
Sbjct: 701 VLNSSTAITSSTALNTSTPITSS--SVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 756
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,457
Number of Sequences: 5004
Number of extensions: 56234
Number of successful extensions: 357
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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