Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C09
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                 50   2e-06
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                50   2e-06
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   5e-05
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)                41   0.001
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                36   0.051
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   32   0.48 
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              31   0.83 
SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         29   3.4  

>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 109

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +1

Query: 685 EMKLFTREELKSRSTRADAVLIIHNEVYDVXKFLLEHPGGE 807
           + KL+T +E+K+ +      L+IHN+V+DV KFL EHPGGE
Sbjct: 6   DKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGE 46


>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 172

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +1

Query: 685 EMKLFTREELKSRSTRADAVLIIHNEVYDVXKFLLEHPGGE 807
           + KL+T +E+K+ +      L+IHN+V+DV KFL EHPGGE
Sbjct: 6   DKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGE 46


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +1

Query: 691 KLFTREELKSRSTRADAVLIIHNEVYDVXKFLLEHPGGE 807
           K FT ++L   +T  +A L IH +VYDV  FLL HPGG+
Sbjct: 23  KTFTWQQLSRLNTEQNAHLAIHGKVYDVTNFLLRHPGGK 61


>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
          Length = 142

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +1

Query: 691 KLFTREELKSRSTRADAVLIIHNEVYDVXKFLLEHPGGE 807
           K++T +E+K   ++ D  +++ + VYD+ K++  HPGGE
Sbjct: 11  KVYTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGE 49


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 697 FTREELKSRSTRADAVLIIHNEVYDVXKFLLEHPGGE 807
           F+REE+    +  D  +I   +VYD+ KF   HPGG+
Sbjct: 10  FSREEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGK 46


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 682  GEMKLFTREELKSRSTRADAVLIIHNEVYDVXKFLLEHPGGE 807
            G + L   E+L++ +      ++IH +VYD+ +F  E P GE
Sbjct: 1226 GSLTLIRPEDLENHNKEGGMWVVIHGKVYDLKEFKEEAPCGE 1267


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 691 KLFTREELKSRSTRADAVLIIHNE-VYDVXKFLLEHPGG 804
           K++++EE+   + R   + + +   VYD+  F+  HPGG
Sbjct: 202 KIYSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGG 240


>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 231 PVIYLRCRSEEFCDCQWNTKS 169
           PV+Y+RC   ++C   W+ KS
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 231  PVIYLRCRSEEFCDCQWNTKS 169
            PV+Y+RC   ++C   W+ KS
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKS 1148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,268,059
Number of Sequences: 59808
Number of extensions: 425989
Number of successful extensions: 684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)