Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C08
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.99 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.7  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.0  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.2  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.2  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 778 NMTQIYIFLQVHWSFCYKHLCYNWRSVYCCR 686
           N+   ++  Q+H +F +  +C+ W S+ C +
Sbjct: 314 NLESDFLLRQIHAAFFFVTICFTWISISCLK 344


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +2

Query: 314 MINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYD 478
           +I+Q +L+ +  Y  ++++ P T   +N G+ +S  F   Q+ LF+  +   +YD
Sbjct: 218 LIHQHILVNQRVYAEDVIE-PKTFHYKN-GISISMKFDKDQKKLFINDVSTTKYD 270


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +2

Query: 329 MLIERFNYIHNIMKIPHTTILENAGVLLSRVFRIKQRHLFLQSLGRAQYDPKKVNYVPIK 508
           ++ + F+Y  N+ K+P T + +       + F + QR   L  +G  + D     YV   
Sbjct: 147 LISDSFSYRLNLSKLPRTPLEKCTVARACKQFPLNQRSPLLDLMGSFERD-----YVNFS 201

Query: 509 ALVEKTDVEFCNNFA 553
              +    + C++ A
Sbjct: 202 NFSQMLSAQLCDSMA 216


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 464 RAQYDPKKVNYVPIKALVEKTDVEF 538
           R Q + KK+N  P  A+V  +DVEF
Sbjct: 8   RFQRNKKKINSKPGGAMVASSDVEF 32


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +2

Query: 614 YPVLPSNSLFSNAL-----IE*YNRASKMPATVNTPP 709
           YP L    +++N L     I+  NRAS M AT+ TPP
Sbjct: 54  YPTLSHEPVYTNVLDLSSRID-ANRASIMSATMGTPP 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,713
Number of Sequences: 5004
Number of extensions: 55628
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)