Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_C08
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 61 1e-09
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 57 1e-08
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828... 57 2e-08
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 52 4e-07
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 37 0.021
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 30 1.8
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 29 4.1
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 29 4.1
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 29 4.1
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 28 9.6
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 60.9 bits (141), Expect = 1e-09
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = -2
Query: 747 SIGHFATNICAIIGGVFTVAGIFDALLYHSINAFENKLLLGKTG 616
S+ HF TNICAI+GG+FTVAGI D+ +YH A + K+ +GK G
Sbjct: 362 SLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKMEIGKLG 405
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = -2
Query: 747 SIGHFATNICAIIGGVFTVAGIFDALLYHSINAFENKLLLGK 622
S+ H+ TN+CAI+GGVFTV+GI D+ +YH A + K+ LGK
Sbjct: 283 SLLHYLTNLCAIVGGVFTVSGIIDSFIYHGQKALKKKMELGK 324
>04_04_0097 -
22782031-22782122,22782504-22782570,22782769-22782861,
22782981-22783034,22783163-22783214,22783346-22783413,
22783532-22783711,22783843-22783935,22784585-22784665,
22785011-22785091,22785204-22785331,22786502-22786643
Length = 376
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -2
Query: 738 HFATNICAIIGGVFTVAGIFDALLYHSINAFENKLLLGK 622
HF TN+CAI+GGVFTV+GI D+ +YH A + K+ +GK
Sbjct: 336 HFLTNVCAIVGGVFTVSGIIDSFVYHGQRAIKKKMEIGK 374
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = -2
Query: 750 RSIGHFATNICAIIGGVFTVAGIFDALLYHSINAFENKLLLGK 622
+S HF TN+CAIIGGVFTVAGI D+ ++H+ K+ LGK
Sbjct: 453 KSFSHFITNVCAIIGGVFTVAGILDS-IFHNTLRLVKKVELGK 494
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 750 RSIGHFATNICAIIGGVFTVAGIFDALLYHSINA 649
R+ HF T +CA++GG F + G+ D +Y I +
Sbjct: 321 RNFLHFLTRLCAVLGGTFAMTGMLDRWMYRLIES 354
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 432
H L N +K ++H +L LL H+ ++ I H++ T KR V
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIV 110
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 432
H L N +K ++H +L LL H+ + I H++ T KR V
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 HILQNYYK--ILHQFFQLALL*EHSSLFLGHIVHDLMTAKRDVFV 432
H L N +K ++H +L LL H+ + I H++ T KR V
Sbjct: 133 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 177
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 245 IKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVF 424
+ EE+GF +++ +++ P ++++ + ++ + + I++ VLLS
Sbjct: 260 LMEELGFSQDDLLVIMRKLPNFLALSEKKIRRAVEFLKRDVGLEGRYIVQRP-VLLSYSL 318
Query: 425 --RIKQRHLFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNNF 550
R+ RH L+ L +++Y AL EK +F N F
Sbjct: 319 ERRLLPRHCLLKVLRTKGLLNSELDYYSTAALSEK---KFVNKF 359
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 721 DVCSKMTNGPVKIYRFVSY 777
DVCS PV++Y FV Y
Sbjct: 198 DVCSSHAPAPVRVYNFVKY 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,925
Number of Sequences: 37544
Number of extensions: 277404
Number of successful extensions: 598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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