Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C08
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)                 45   6e-05
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)             28   7.4  
SB_5951| Best HMM Match : 5_nucleotid (HMM E-Value=0.0013)             28   7.4  
SB_43250| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)
          Length = 342

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 26/120 (21%), Positives = 60/120 (50%)
 Frame = +2

Query: 245 IKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIHNIMKIPHTTILENAGVLLSRVF 424
           +++ + F   +++ +LL +P++   ++  +  ++ Y +  M     +I     +    + 
Sbjct: 224 MEKVLRFNHHQLRNILLKQPRVLTFSKEGMKAKYRYCYEEMNASCNSIARCPRLFQCSLK 283

Query: 425 RIKQRHLFLQSLGRAQYDPKKVNYVPIKALVEKTDVEFCNNFAKCDIDDFNMFLKTL*TV 604
           RIK+RHLFL+ +GR + D    +Y  +  ++   +  F    A   +++FN F  +L +V
Sbjct: 284 RIKERHLFLRHVGRLKEDMIVDDY-GLGVILSPNEKIFAEKIALSSLEEFNDFRHSLSSV 342


>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
          Length = 762

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 158 SGKNVRCLATTQPKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLWMINQ 325
           SGK VR +AT +  LI+Y   H+ C  F   +    K +  + LL+    LW+  +
Sbjct: 348 SGKTVRRVATKRAGLISYVSSHLICIGFHSLQNQSRKSDR-RALLVCFLLLWLATE 402


>SB_5951| Best HMM Match : 5_nucleotid (HMM E-Value=0.0013)
          Length = 405

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 194 PKLITYNLHHVKCNTFAIKEEMGFKDEEIKMLLLNKPKLWMINQRMLIERFNYIH 358
           P ++      +K     I+ ++G   +    LLLN P   +  +  + ERF  IH
Sbjct: 148 PLMVVMRAFDLKNQVSLIQAQLGMAQQTALRLLLNMPCFLLHGREKMSERFQSIH 202


>SB_43250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 301 TETLDDKSKNANRKI*LYSQYNENSSHNNIRECWSLIKQ 417
           TE      +N+ R   + S+Y+  SS  N+++CW ++ Q
Sbjct: 209 TEASSSGDRNSRR---MRSRYDRLSSSQNLQKCWQVLAQ 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,646,709
Number of Sequences: 59808
Number of extensions: 368306
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)