Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_C07
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 120 2e-28
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.69
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 29 0.69
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.69
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 1.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.1
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 27 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 6.4
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 6.4
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 8.5
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 8.5
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 8.5
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 120 bits (290), Expect = 2e-28
Identities = 85/238 (35%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Frame = +2
Query: 65 MLLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFA---FTLHKDRQRKEEITSSKS 235
M+LR +S G AR E +D A L +I + N ++ +L ++ + I S+ +
Sbjct: 1 MILRFRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQNESDQGVIFSNLN 60
Query: 236 RQ-LRDCGLCHGDMIYLNPVNGAVLFEQSSTSSETHRKPLSESSRPVQSSEPGPSTSKVT 412
Q L+D GL HG M+YL + S +S + L+ + P Q S P S K +
Sbjct: 61 DQTLQDAGLTHGQMLYLR-----LGTPNSDIASSNNEPALTVTGAPKQVSTPDVSEKKPS 115
Query: 413 LXXXXXXXXXXEEDEVDLQLYKVSGLIERQRDEKLCRHNLNGKCVHCTPLEPWDEEYLKE 592
+ +D +D L K GLI R LCRH G C +C+PLEP+DE Y +E
Sbjct: 116 MPVI--------QDPIDDSLEKEDGLIRRSMTS-LCRHGPKGMCDYCSPLEPYDESYRQE 166
Query: 593 HNIKHMSFHSYLRKI--------TSXNFV-SLEELSCKIKPGCRE-HPAXPRGICSKC 736
+ IKH+SFH+YLRKI +S +F+ LEE S +K C HP P GIC+KC
Sbjct: 167 NKIKHLSFHAYLRKINSNVNKYASSQSFIPPLEEPSFTVKEKCPSGHPPWPAGICTKC 224
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 29.1 bits (62), Expect = 0.69
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 464 LQLYKVSGLIERQRDEKLCRHNLNGKCVHCTPLEPWDEEY 583
L+L K + L + R N +G C P EPW+ EY
Sbjct: 205 LKLPKGASLEDLSRSPSRAVLNEDGNVDECAPPEPWENEY 244
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 29.1 bits (62), Expect = 0.69
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 469 LQIYFIFLWSTRRWGGYW 416
++I++IF+W WGG+W
Sbjct: 99 VRIFWIFVWLEVAWGGFW 116
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.69
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +2
Query: 173 SFAFTLHKDRQRKEEITSSKSRQLRDCGLCHGDMIYLNPVNGAVLFEQSSTSSETHRKPL 352
+F +HK K + +SSKS GL I LNP + SS++S
Sbjct: 313 TFVEAIHKILDTKSKHSSSKSSHDSSQGLESTSSIALNPTSSISSTSSSSSTSSAISTIS 372
Query: 353 SESSRPVQSSEPGPST 400
+ ++ V S P+T
Sbjct: 373 QDHTKTVTSVSDEPTT 388
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 325 CGRLFKEYSTIDWIQVYHVAMTQSTISQL 239
CGR+F+ YS++D + + Q ++Q+
Sbjct: 741 CGRVFRRYSSLDCTSIVEYVIKQFKVNQM 769
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 311 EQSSTSSETHRKPLSESSRPVQSSEPGPSTSKVT 412
E+SS + T +P ++ P ++EP STS T
Sbjct: 31 EESSNTPSTETQPEKKAEEPEAAAEPSESTSTPT 64
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 284 NPVNGAVLFEQSSTSSETHRKPLSESSRPVQS 379
NP+ A L +Q SET RK +++S + +Q+
Sbjct: 26 NPLVPAALVQQEIPVSETSRKVITDSRKEIQA 57
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 317 SSTSSETHRKPLSESSRPVQSSEPGPSTS 403
SSTSS T S SSRP SS S S
Sbjct: 376 SSTSSSTLTSSSSSSSRPASSSSHSSSLS 404
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 417 QYPPHLLVLQRKMK*ICNCTKFLV*LKDR-GMKNYVDIILMANAFTVPR*NLGTKNT*RN 593
+YPP LL K I N T + DR NYV + N T+ ++ +T +
Sbjct: 182 RYPPSLLHQFPSSKDIKNETPTI----DRCDFPNYVPMFAFPNDITIKESDVRPVSTYHS 237
Query: 594 ITLNTCHSTHTYG 632
L + +++H YG
Sbjct: 238 FALTSDNNSHLYG 250
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 262 TQSTISQLSRFAGCDFFLALSVLVQSECERVQIQSF 155
+ S IS SR F+ A+S V S C +Q+QSF
Sbjct: 425 SDSLISWASRLFTKGFWYAISFGVFSNCFSLQLQSF 460
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 152 YEALNLNSFAFTLHKDRQRKEEITSSKSRQLRDCGL-CHGDMIYLNPV 292
Y + + F FT KD K+EIT + LR L H D + P+
Sbjct: 598 YYPIESSEFGFTNLKDVTSKDEITDGFDKALRSNSLRTHRDSRPVQPL 645
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 575 EEYLKEHNIKHMSFHSYLRKI 637
EEY+ N++H+S+ YL+ +
Sbjct: 144 EEYINLSNVQHISYLEYLKNL 164
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 458 VDLQLYKVSGLIERQRDEKLCRHNLNGKCVH-CTPLEPWDEEYLKEHNIKHMSFHSYLRK 634
V +L KV LIE Q ++L R +L+ H C ++ D+E + +++K ++LR
Sbjct: 291 VPKRLLKVYPLIE-QTAKRLHRISLSKVYNHYCPYIDTHDDEKILSYSLKPNQVFAFLRS 349
Query: 635 ITSXNFVSL 661
I F L
Sbjct: 350 ILVRVFPKL 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,953
Number of Sequences: 5004
Number of extensions: 66348
Number of successful extensions: 205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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