Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C06
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   3.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.8  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   6.3  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 577 AGGGGCAPSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFS 449
           A G     S+P     T P  VRC +R       N +  TPF+
Sbjct: 84  AWGSLXRSSSPQTSAPTGPPIVRCALR---KHKPNRKPRTPFT 123


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 139 PGDTVRAPHPGRHVPGAHAPHPGSECPPAHRGSRSTCSA 255
           P D   +P P   +P A  P P +  P       ST SA
Sbjct: 73  PSDGTTSPEPDPEIPVAPEPAPLAS-PLVQEPGSSTTSA 110


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 631 PPTEPRATVRSKG 669
           PPT+P  T RS+G
Sbjct: 552 PPTKPYGTCRSEG 564


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 505 EMRWYCSRCGNSQK 464
           EMRWYC      +K
Sbjct: 290 EMRWYCQTATMEEK 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,239
Number of Sequences: 336
Number of extensions: 3395
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)