Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_C06
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.049
SB_24786| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 30 1.8
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 30 2.4
SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25) 29 3.2
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10) 29 3.2
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 4.2
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023) 29 4.2
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 29 5.6
SB_48373| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_43992| Best HMM Match : BA14K (HMM E-Value=8.5) 28 7.4
SB_4620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_42006| Best HMM Match : EGF_2 (HMM E-Value=8.7e-05) 28 9.8
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 28 9.8
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 28 9.8
>SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 35.5 bits (78), Expect = 0.049
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 491 LQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVG-VQRH 378
++ VRELA+ H VQ HL+GAR+ G+PV + +H
Sbjct: 75 MKKVRELADAHGVQVHLDGARVFNAAASLGVPVSDISQH 113
>SB_24786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 277 SRGSVLGPHCRLIANLCAPGGTLTLD 200
+R ++L P RL++N C+PG L L+
Sbjct: 15 TRYAILSPRARLVSNSCSPGDPLVLE 40
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 287 RDVVPRVRVGSALQVDREPLCAGGHSDPGCGACAPGTCRPGW 162
R+VV G L+V LC HS P C+ C+ GW
Sbjct: 424 RNVVCAQDEGKILRVVPRDLCDRNHSMPSIEKCSTRPCQAGW 465
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = -1
Query: 515 REVRDALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAE 336
RE+ ++ + R L + V + G L++ ++L + HP R ++G P + E
Sbjct: 235 RELASQMLYEVSRLLGDKSIVASFVSGVDLSRQEKL----LKDSLHPPRIVIGTPKRLWE 290
Query: 335 VVPHDAHLHEAEVEVQRDVVPR 270
+V HL + + D V +
Sbjct: 291 IVQEHEHLFQRTKRIVIDEVDK 312
>SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)
Length = 1034
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -1
Query: 482 VRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVPHDAH 315
++E +H + L+G L RLE PVG + + +L HV E++ + H
Sbjct: 749 LKETGPIHKLSPVLDGGLLRVGGRLERAPVG-YKFKHQMILPRKHHVTEIILRECH 803
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 547 PMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLR 437
P+N T + S+ E+ W CS C ++ F AT R
Sbjct: 913 PVNLTVRALSSTSLEVTWDCSDCHDTNNTIAFLATYR 949
>SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 139 PGDTVRAPHPGRHVPGAHAPHPGSECPPAHRGSRST 246
P + + PG + G H H + P H GS+ T
Sbjct: 376 PENELTGQRPGYKLSGVHGAHQSDKIPEGHHGSKVT 411
>SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10)
Length = 283
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Frame = +1
Query: 100 RKKNKNGSTADIQPGDTVRAPHPGRHVPGAHAPHPGS----ECPPAHRGSRSTCSAD 258
R + + D++ GD + G V A APH G C P HR TC D
Sbjct: 106 RSLRTSKAKGDMEMGDVTSSVPLGSPVTFAFAPHVGPVFSVNCSPYHRNLFLTCGTD 162
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 131 IYNPVIPCVHPIPGGMYPGRMLRIQGQSAPRRTEVRDQPAVRTQHGPAGRHRAA 292
I +P P P PG + GR L +P R + R +R+ G G RAA
Sbjct: 1503 ITSPEPPATRPHPGRVEAGRALGKVETDSPERRKKRFVSPLRSSCGYPGAERAA 1556
>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
Length = 906
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 689 GALSTPAPRTAPCHTPTDAP 748
G L+ PRT PC TP +AP
Sbjct: 411 GKLAHKGPRTEPCDTPKEAP 430
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 110 IKMAVPPIYNPVIPCVHPI 166
+K+AV P +PV PCV P+
Sbjct: 545 VKVAVTPCVDPVTPCVDPV 563
>SB_48373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = -2
Query: 520 STVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSGIPPAVSSAPQLM 344
+T RC C R GNS K T +A A S C+ V + PQL+
Sbjct: 148 ATARCLWLSACDRIGNSSKTTMSAANPPRESLSPVEAIPTSTSVCTLFMCEVGNLPQLV 206
>SB_43992| Best HMM Match : BA14K (HMM E-Value=8.5)
Length = 95
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 125 PPIYNPVIPCVHPIPGGMYP 184
PP Y PV PC P+P + P
Sbjct: 64 PPFYGPVPPCYGPVPPLLRP 83
>SB_4620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 104 KRIKMAVPPIYNPVIPCVHPIP 169
+R+K A+ P + P+ PC P P
Sbjct: 10 ERLKTAIDPFFTPIHPCPIPFP 31
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 374 ARRLL-GAPAHVAEVVPHDAHLHEAEVEVQRDVVPRVR 264
+RR+L P H V +DAH H E RDV PR R
Sbjct: 34 SRRILYKLPGHAGSV--NDAHFHPTEPICLRDVSPRRR 69
>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +3
Query: 219 PGAQRFAINLQCGPNTDPRDDIALHLNFRFVEMCVVRNHLSNMSWGAEETAGGMPLHANG 398
PG A+NL G DPRD I H+N R + VR+ G + +
Sbjct: 479 PGDYEKAVNLLEGRFGDPRDVIEAHVN-RITDWPAVRSDDRTGFEGFADALQAAVFALDN 537
Query: 399 ETFEALVLCEP 431
TF+ + C P
Sbjct: 538 PTFQHELQCLP 548
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 157 APHPGRHVPGAHAPHPGSECPPAHRGSRSTCSADP 261
A G P AH PGS P GSR T S P
Sbjct: 832 ASRHGNQAPEAHHHEPGSYKSPHSEGSRRTPSGVP 866
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 680 SPVGALSTPAPRTAPCHTPTDAP 748
+P G P PR AP H P + P
Sbjct: 1086 TPPGQPPLPVPRPAPAHAPAEVP 1108
>SB_42006| Best HMM Match : EGF_2 (HMM E-Value=8.7e-05)
Length = 326
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = -2
Query: 538 CTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSP 395
C S RC+ W + C N C P+ A R + S + P
Sbjct: 110 CAIDGTSCERCQTGWTGANCDNVTACFPWLACAHGRCTKSRFRCECDP 157
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 107 RIKMAVPPIYNPVIPCVHPIPGGM--YPGRML 196
+I++ +PP+ NP PC+ + G+ Y GR L
Sbjct: 153 KIRIPIPPLANPRTPCLPSLYPGLVQYVGRYL 184
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 631 PPTEPRATVRSKGSTEESGRGALDTRSEDCPLSHP 735
PPT P +R K S L T S D PL+ P
Sbjct: 232 PPTPPTVRLRKKESASRIPPPLLTTMSLDTPLAEP 266
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 680 SPVGALSTPAPRTAPCHTPTDAP 748
+P G P PR AP H P + P
Sbjct: 219 TPPGQPPLPVPRPAPAHAPAEVP 241
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,609,054
Number of Sequences: 59808
Number of extensions: 488000
Number of successful extensions: 2840
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2832
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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