Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C05
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    26   0.38 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   0.67 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.0  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 377 KKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 463
           +KH+  RK ++P   +QL+   K   DKQ
Sbjct: 110 RKHKPNRKPRTPFTTQQLLALEKKFRDKQ 138


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 496 AAELSKNQLKSQCLSYLSQWKHD 564
           A+   +  L S CLS+ SQW +D
Sbjct: 117 ASSKLRASLISSCLSFFSQWGYD 139


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 455 DKQREKTILNVKPKLQNFQKINSNLSVSAIFP 550
           D+ + + +LN+ PK  NF+ I S    SA  P
Sbjct: 176 DEVKPRGVLNIIPKQDNFRAIVSIFPDSARKP 207


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 254 YQYLPKY*TIANRKQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPK 424
           YQ+L +Y   A   Q + R    +  NL  +     + P  K  +VKR    P +PK
Sbjct: 159 YQHLHRYKEEA--LQGDGRMRQHVMHNLSSVPQPQPVLPTYKWMQVKRNVPKPTVPK 213


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 254 YQYLPKY*TIANRKQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPK 424
           YQ+L +Y   A   Q + R    +  NL  +     + P  K  +VKR    P +PK
Sbjct: 159 YQHLHRYKEEA--LQGDGRMRQHVMHNLSSVPQPQPVLPTYKWMQVKRNVPKPTVPK 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,653
Number of Sequences: 336
Number of extensions: 2762
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)