Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C04
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    32   0.040
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   1.1  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   2.0  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   2.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   4.6  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    25   6.1  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   8.0  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 262  FLNRFSIMLVFWWEDLSFCIGYPFFKIF 179
            FL RFS+     W +L   +GY FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 191 EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 292
           +++   + ++FP   Q D E I +L  DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 337 NYIIYKLGSLGFQTLHLFLPHILY*FLNRFSIMLVF 230
           N +I   G  G +T   ++ H+L+  LNR ++ L++
Sbjct: 536 NLLILCKGFEGLETFFAYIVHLLHGVLNRNNVKLIY 571


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 236  QHDREAIQKLIQDMRKKQMQSLESK*TKF 322
            Q   E +  +IQDM KKQ    +S  T+F
Sbjct: 960  QRTNEVLLPVIQDMHKKQFVGTQSNLTQF 988


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 126 WLCTHRFLLDCSFFSTNQNILKNG*PIQKDKSSHQKTNMIEKRF 257
           WLCT    L C+  S   +I+      +  KSS  KTN++   F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 305 IPDFAFVSSSYPVLIFESLLYHVG 234
           IP+   +S +YP LIFE+L   +G
Sbjct: 174 IPNTGTMSEAYPHLIFENLTSKLG 197


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 LVFWW-EDLSFCIGYPFFKIFWLVEKKEQSNRKRCV 134
           L FW  E L     Y     FWL++KK+Q +++R V
Sbjct: 23  LDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIV 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,254
Number of Sequences: 5004
Number of extensions: 36692
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)