Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C04
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   8e-07
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   2.0  
SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)                      29   2.7  
SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)                  29   2.7  
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 28   3.6  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)                 27   8.2  

>SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +2

Query: 113 EVGRMAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPE 232
           E   +A+Y  FPV LF++FN P+ +E++V N K QI+PP+
Sbjct: 17  ETSWIAVYVFFPVALFYYFNLPEIYEDYVNNKKGQIYPPD 56


>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 196 PFFKIFWLVEKKEQSNRKRCVHSHPTHF*FPITHSLK--ISFQILRN 62
           PF K+FW V+KK  S     V  HP    F ++ + K    ++ LRN
Sbjct: 115 PFMKLFWQVQKKLFSKTSTGVRYHPMIIRFCLSLAAKSPSCYEELRN 161


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 246 LSCWFSGGKICLFVLVTHSSKYFGWLKKKNNPTGNDVYIAILP-TSSFQLPIV 91
           ++CW     I   V   H   Y  WL K+   T   V++ +LP  +S   PI+
Sbjct: 272 IACWAPFFIIMFIVQFCHDCVYNSWLTKEAQMTIGTVFVYVLPLLNSAANPII 324


>SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)
          Length = 332

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 200 TNTKRQIFPPENQHDREAIQKLIQDMRKKQ 289
           +NT   + P EN+ D  +I++ + D+RK++
Sbjct: 285 SNTSYGVVPSENKRDLRSIEETLNDIRKRK 314


>SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)
          Length = 333

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 185 FEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TKFINNI 334
           FEE     K +IF  ENQ +   ++KL +D   +++++L  K  K  N +
Sbjct: 72  FEEREVELKEEIFELENQVETLKLEKLKRDREIERLEALLRKSAKENNRL 121


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 179 KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKK 286
           K   E   ++ R +  PE QHD EAI++   D+ ++
Sbjct: 620 KIAPEAFNDSARYVNTPETQHDVEAIERFFNDLSQQ 655


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 263  IFESLLYHVGFLVGRFVFLYWLPILQNILVG*KKRTIQQE 144
            +F+S+L    F  G +    WLP+L+ I  G KK   QQ+
Sbjct: 3518 VFKSMLSEDSFPPGDYASEAWLPLLRQI--GLKKAVTQQD 3555


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 169 QPTKIF*RMGNQYKKTNLPTRKPT**RSDSKINTGYEEETNAKSGIQVNQ 318
           QPT +       YK+TN PT +PT   ++   N    + TN  +    NQ
Sbjct: 200 QPTNL--PPNQPYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQ 247


>SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
          Length = 215

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 176 PKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLES 307
           P  FEEW+    ++    E +  REA QK  ++ RK++ + L +
Sbjct: 158 PLKFEEWMRRKDQEALEREERARREAEQK-YEEKRKRREEVLRA 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,184,266
Number of Sequences: 59808
Number of extensions: 221478
Number of successful extensions: 497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)