Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C03
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       29   2.6  
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)                     27   8.0  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 169 VVAVTRVDLLRSCQS-YNEDGEQNEQFREHFEQFSK 65
           ++ V R +L++ C   +NE  E  + +++ +EQF K
Sbjct: 339 ILKVIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGK 374


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 67  LKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQL-RIYVSRLRRLSRIQSPGLWIVRW 243
           L     + ETV  VR+      +      W  L +L     +R R  SR +  G W+V W
Sbjct: 170 LNGESGLNETVFKVRKVLSKHKEAMNASPWRSLPELTNAGGARCRDSSRPRR-GPWLVCW 228

Query: 244 LCCLS 258
            CC++
Sbjct: 229 TCCMT 233


>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 22  FFKSSRAGV---LXHQSTLKTAQNVRETVHSVRRPRCS 126
           FF +S  GV   L H  TL  A + +   HSV  P C+
Sbjct: 26  FFSASGTGVEAFLTHDGTLVVASSNKREYHSVMVPDCN 63


>SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)
          Length = 233

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 22  FFKSSRAGV---LXHQSTLKTAQNVRETVHSVRRPRCS 126
           FF +S  GV   L H  TL  A + +   HSV  P C+
Sbjct: 190 FFSASGTGVEAFLTHDGTLVVASSNKREYHSVMVPDCN 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,452
Number of Sequences: 59808
Number of extensions: 229005
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)