Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C02
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1076 + 34359922-34360452                                         35   0.066
06_02_0195 + 12895579-12895968                                         30   1.4  
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    30   1.4  
07_03_1794 - 29580767-29584189                                         29   2.5  
04_02_0009 + 8476600-8477125,8478711-8478730                           29   2.5  
07_03_1533 + 27523811-27524710                                         29   3.3  
06_02_0233 + 13315579-13316046                                         28   5.8  
03_01_0638 - 4676624-4676756,4676792-4676943,4677089-4677262           28   7.6  

>01_06_1076 + 34359922-34360452
          Length = 176

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 399 GGGGSQTKLLPGSERRGQRRPQECREGHR*QHXGRQQESAGLERGRRLQ-EPHRERRVQR 223
           GGGG +    P    RG  R    R   R +  GRQQ++A    GRRL+ E  R R +  
Sbjct: 61  GGGGDELSAQPRRRPRGGSR----RWSSRGRQPGRQQKAAPRRPGRRLKAEGVRCRPMVA 116

Query: 222 CTXQELPEAIRGP 184
           C+ ++   + R P
Sbjct: 117 CSKRQSARSARSP 129


>06_02_0195 + 12895579-12895968
          Length = 129

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 402 CGGGGSQTKLLP-GSERRGQRRPQECREG-HR*QHXGRQQESAGLERGRRLQEPHR 241
           CG  G+Q   LP G + + +      R   H     GR+QE+A   R R +  PHR
Sbjct: 43  CGRPGAQAATLPLGEQSQSEAATAAARFSLHSLDAGGRKQEAADDARRRAVMPPHR 98


>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -1

Query: 399 GGGGSQTKLLPGSERRGQRRPQECREGHR*QHXGRQQESAGLERGRRLQEPHRERRVQRC 220
           GGGG   K     ERR + + +E  E  R +   +++E    ER  R +E  R+R  +  
Sbjct: 474 GGGGKGEKEREEEERRQREKEEE--ERRRQEEERKRREEEEKERREREEEERRQREKEEK 531

Query: 219 TXQELPEAIR 190
             +E  E  R
Sbjct: 532 KRREEEEQRR 541


>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = -2

Query: 377 SFCLEV--SGAGSDDLRSVERDTVNSXQDDSRRVRGLREGGDCRNHTGSDECSVVQXRSY 204
           S CL+   + + SD+  S    TVNS    S+R++GLR GGD  + +G+   S++Q    
Sbjct: 556 SECLDTLTNKSDSDEKGSSVVVTVNSF-GGSKRIQGLRIGGDENSMSGN---SLIQEELR 611

Query: 203 QRRSVDHXGAVLGQRTNSRHDSAVGQRSHQ 114
             +S+   G V    + ++H  + G  + +
Sbjct: 612 DDKSLKTPGYVNLVGSTNQHSLSDGSTTEE 641


>04_02_0009 + 8476600-8477125,8478711-8478730
          Length = 181

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 297 RQQESAGLERGRRLQEPHRERRVQRCT 217
           R++  A + RGRRL+   R R  +RCT
Sbjct: 126 RRRSPAAVARGRRLRRQQRRRPTRRCT 152


>07_03_1533 + 27523811-27524710
          Length = 299

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = -2

Query: 356 GAGSDDLRSVERDTVN-----SXQDDSRRVRGLREGGDCRNHTGSDECSVVQXRSYQRR 195
           G G  D RS  +  V         DD+ RV G   G    NHT      VV+ R  +RR
Sbjct: 119 GGGDGDRRSNRKSMVTVDAEVDTDDDALRVNGTGAGAGAGNHTRGSGGVVVRRRHRRRR 177


>06_02_0233 + 13315579-13316046
          Length = 155

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -1

Query: 408 TACGGGGSQTKLLPGSERRGQRRPQECREGHR*QHXGRQQESAGLERG-RRLQEPHRERR 232
           TA  GGG   +L      R QRRP   RE  R +   R++ S   E G  R   P  E R
Sbjct: 71  TAVFGGGVGGRLSAERRSRWQRRPAR-RERRRWRPAWRERRSRWREVGLAREARPVEEAR 129

Query: 231 VQRCTXQELPEAIRG 187
           + R     + EA  G
Sbjct: 130 LAREARPAVEEATFG 144


>03_01_0638 - 4676624-4676756,4676792-4676943,4677089-4677262
          Length = 152

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = -1

Query: 399 GGGGSQTKLLP--GSERRGQRRPQECREGHR*QHXGRQQESAGLERGRRLQEPHRERRVQ 226
           GGGG+   +    G  RRG+ + +    G   +  G    +A +  G    +P   RR  
Sbjct: 52  GGGGAMMAVAAAGGQPRRGRTKEEPAAAGAEEEKGGEDAAAAAVAIGMPSSKPEMTRRAL 111

Query: 225 RCTXQELPEA 196
           R       EA
Sbjct: 112 RAEEAAAAEA 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,459
Number of Sequences: 37544
Number of extensions: 282334
Number of successful extensions: 937
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)