Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_C02
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86) 33 0.16
SB_8952| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_2277| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 29 3.4
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 28 5.9
>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
Length = 427
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 53 QNEQIGGVVFNLRGRRRQTKLGGSF 127
+NE+ G++ N+RG+ ++ KLGG F
Sbjct: 79 ENEEYAGIILNVRGKNKKEKLGGLF 103
>SB_8952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 31.5 bits (68), Expect = 0.63
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = -1
Query: 393 GGSQTKLLPGSERRGQRRPQECREGHR*QHXG----RQQESAGLERGRRLQEPHRERRVQ 226
GG KL +E R E H H R Q AGL G +EPH +RR+Q
Sbjct: 54 GGLLRKLCGSAECASSGRSGEQAVNHFPGHYDDCHVRHQLRAGLF-GHDSEEPHAKRRIQ 112
Query: 225 RCTXQE---LPEAIRGP 184
RC + PE+ R P
Sbjct: 113 RCQADKSDPFPESGRQP 129
>SB_2277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + P Q WWL W +L CL
Sbjct: 36 NWWLAWNIALSCHPRQYNWWLTWNLSLLCL 65
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSC 147
NWW + Q WWL W ALSC
Sbjct: 19 NWWLAWNPDLSCLMRQYNWWLAWNIALSC 47
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 368 LEVSGAGSDDLRSVERDTVNSXQDDSRRVRGLREGGDCRNHTGSDECSVVQXRSYQRRSV 189
+E G G++D+ ERD + S D + G +C TGS+ S R V
Sbjct: 541 IEGGGTGTEDVTGSERDVIGSEGDIAGSEDGATGNEEC--STGSE--SETTESGDDTRGV 596
Query: 188 DHXGA-VLGQRTNSRHDSAVGQRSH 117
G+ + + +S S+ G RSH
Sbjct: 597 PRSGSEAITNKHDSGFGSSFGARSH 621
>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 1841
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + Q WWL W AL CL
Sbjct: 532 NWWLAWNPDLSCLMRQYNWWLAWHLALLCL 561
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 88 SRPPXPNQAWWLLWPTALSCL 150
S P P WWL W AL CL
Sbjct: 1146 SAPIQPEYNWWLAWNPALLCL 1166
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1324 NWWLAWNPALLCNSRQYNWWLAWNPALLCL 1353
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1154 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1183
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1171 NWWLAWNPALLCLMRQYNWWLAWNLALLCL 1200
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1205 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1234
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1222 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1251
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1239 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1268
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1256 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1285
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1273 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1302
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1290 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1319
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1188 NWWLAWNLALLCLMRQYNWWLAWNPALLCL 1217
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 384 QTKLLPGS-ERRGQRRPQECREGHR*QHXGRQQESAGLERGRRLQEPHRERRVQRCTXQE 208
QT LL + R + + + RE H + ++QE A LE G +E + + +E
Sbjct: 4017 QTSLLKSRLDERKRNKMRRMREAHEAEKAKQEQEMAALEAGFDAEEARGVAEITKKLNEE 4076
Query: 207 LPEAIR 190
E I+
Sbjct: 4077 HKEVIK 4082
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 158 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 187
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRPPXPNQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 175 NWWLAWNPALLCLMRQYNWWLAWNLALLCL 204
>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -2
Query: 320 DTVNSXQDDSRRVRGLREGGDCRNHTGSDEC 228
D + + DD+ G R DC+N+ ++ C
Sbjct: 70 DNIINDNDDNNNSHGYRSNSDCKNNINNNNC 100
>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 583
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 357 RRGQRRPQECREGHR*QHXGRQQESAGLERGRRLQEPHRERRVQRCTXQELPEAIR 190
R + RP+E R H R QE E+ + H+ER ++ + ++ P R
Sbjct: 425 RLEEERPEEERTHEERSHKERSQEKRSHEKRPHEERSHKERSQEKRSHEKRPHEER 480
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,060
Number of Sequences: 59808
Number of extensions: 309099
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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