Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C02
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 72  VLFS--IFAAAXAKPSLVAPLAYSAVVPGVSSLSQYSTXVVHGSPLV-APXLYN 224
           V+FS  IF+     PS+++P  +S  VP    LS Y       SPLV AP + N
Sbjct: 377 VIFSPNIFSPLILNPSVLSPWIFSPAVPLPFILSPYLLSPYIFSPLVMAPFILN 430


>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 PLDTPEVVAARAAHFQAKALSGYHHLR 401
           P+DTP   +  AA  +    SGYHHLR
Sbjct: 479 PIDTP-TPSGTAAWIKESYYSGYHHLR 504


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 PLDTPEVVAARAAHFQAKALSGYHHLR 401
           P+DTP   +  AA  +    SGYHHLR
Sbjct: 479 PIDTP-TPSGTAAWIKESYYSGYHHLR 504


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,556,709
Number of Sequences: 27780
Number of extensions: 212985
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)