Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C01
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    34   0.018
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    29   0.87 
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.7  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.7  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    27   3.5  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   6.1  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 226 ELXDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKR 381
           EL D +  + +  + G ++L+    + KER +IE EYA KL  L   Y  K+
Sbjct: 11  ELHDDFKVVDSWINNGAKWLEDIQLYYKERSSIEKEYAQKLASLSNKYGEKK 62


>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 460 QREVVAENLQSNVVRELHLLAKELREERKQ-HLNEGA 567
           +++V+ EN +   + E  L  + L++ERK+ H NEGA
Sbjct: 63  RKKVIEENRKKEEIEERILTDRILQQERKKSHANEGA 99


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 391 DEYQYTACKAFKQLLQELGDFAGQREVVAEN--LQSNVVRELHLLAKELREERKQH 552
           D Y Y    A  + L+  G F      V E   L ++++ + H L +ELR+E+ QH
Sbjct: 387 DLYPYQMKLASLENLRVNGKFLASDHSVPEGQELVNSLLTQCHQLIEELRDEKHQH 442


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/81 (27%), Positives = 28/81 (34%)
 Frame = +1

Query: 286 DKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKXXDEYQYTACKAFKQLLQELGDFAGQR 465
           DKY      R    L       +L + + P R     +Q    K    L Q L DF G  
Sbjct: 230 DKYSILSAARLRSRLRMGLSSEQLSEMF-PNRMDFSRFQIERLKERNDLTQRLMDFTGMN 288

Query: 466 EVVAENLQSNVVRELHLLAKE 528
           E     + S   RE  L+  E
Sbjct: 289 EFGPSRVVSEKNREYILVKNE 309


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 551 CCFLSSRNSLASRCNSRTTFD*RFSATTSRCPAKSPNSCSNCLNALH 411
           CC  SSR++  SR N  T          +R     P  CS+ +NA H
Sbjct: 448 CCLASSRSTSISRKNRYTDI---VPYDKTRVRLAVPKGCSDYINASH 491


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 602 EPIEVFRTPICFAPSFKCCFLSSRNSLASRCNSRTT 495
           EP +    P+C+AP      LS R S  + C S  +
Sbjct: 163 EPDDFVECPVCYAPLSSFKTLSERESHVANCLSNNS 198


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 397 YQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVREL 510
           Y  +  +AFK ++   G ++G   V  ENL+ ++V  L
Sbjct: 116 YHPSPFQAFKHIIDNGGKYSGLDRVFLENLRKSLVVSL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,603
Number of Sequences: 5004
Number of extensions: 52332
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)