Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C01
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/36 (22%), Positives = 23/36 (63%)
 Frame = -3

Query: 171  TLKLH*HTIVVNTKNYRTNSTNNIFLITTTISKHIP 64
            T++L  H+++ + ++   +S +N+  +TT ++  +P
Sbjct: 933  TIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILP 968


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 231 KLNTPTHXSGSKITSHTPKXTLKLH*HTIVVNTK 130
           K+N     SG+KI+  T K  +K +  T V N+K
Sbjct: 544 KMNETYINSGNKISLATSKSFIKANSQTEVSNSK 577


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 403 YTACKAFKQLLQELGDFAGQREV--VAENLQSNVVRELHLLAKELREERKQHLNEGAKQ 573
           +++ K  +    ELG    ++ +  + E LQ NV+++ HLL    +++    L + A Q
Sbjct: 124 FSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQ 182


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 258 PYAQRNRVFR*IWKLCQGEVRY 323
           P A  ++    IWK C+G++ Y
Sbjct: 188 PLAHYDQTAIEIWKQCEGKIDY 209


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 103 IICGICSVIFCVYHYCVS 156
           I+CGI  +   +Y+Y  S
Sbjct: 7   ILCGIAVLFLALYYYLTS 24


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 72  HIPQE*TWLTDVTFHS 25
           H+P E  WL D+  ++
Sbjct: 96  HVPSEHIWLPDIVLYN 111


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 626 TNVRRESRKEHSRPSK 673
           T +RR  +  H+RPSK
Sbjct: 16  TRLRRHIQNVHTRPSK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,299
Number of Sequences: 438
Number of extensions: 3830
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)