Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_B22
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 33 0.35
01_01_1213 - 9769268-9769975 32 0.61
07_01_0245 - 1803170-1803887,1803971-1804641 31 1.4
12_01_0856 + 8034181-8035425 30 2.5
01_01_0218 + 1856104-1856700,1856814-1857452 30 2.5
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 29 3.2
05_04_0035 + 17378541-17381276 29 3.2
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498... 29 4.3
08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544 29 5.7
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 29 5.7
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 5.7
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 5.7
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 29 5.7
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 29 5.7
01_01_0012 + 71903-72935,73468-73981,74619-76008 29 5.7
07_03_1507 - 27228032-27228742 28 7.5
06_03_1214 + 28469848-28473048 28 7.5
06_03_0675 - 23428948-23431389 28 9.9
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 32.7 bits (71), Expect = 0.35
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = -3
Query: 653 QQIHKKL-LVEESHVRVHHCRLL*VSGQLVVGTVQQKLVL*LGSQKLNTLGLYRHSVDDD 477
+ IH ++ L EE H+ C L+ + G+L+ ++ L KLN + V+D
Sbjct: 578 EPIHVEMDLFEEDHIGREFCYLVDMDGELISVFLRNANEL-PRVFKLNRTEISWVEVEDI 636
Query: 476 HADALVNDSRNVSGAVRNDGRAHERHYFDRVILDVSP 366
AL D R+ G DG R YF R D P
Sbjct: 637 GGGALFLDYRSSYGVASPDGGNGNRIYFPRYSKDGKP 673
>01_01_1213 - 9769268-9769975
Length = 235
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 50 CAQAHTLWPHSPSSPTPCPNVXLXSPYSVPAVHRAVQAAQAP 175
C W H P+ P P P+ SP + A+ A+ A+ AP
Sbjct: 5 CVSLDATWAHLPAPPPPPPHHTWLSPAADDAITAALWASMAP 46
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 301 PLLTSWYCRFTL*QLRKPEYSPPLTILPSPQ*STCSISAPVKGSLSSLY 155
P + YC+ L +L PL + PSP+ S AP G+L++ +
Sbjct: 33 PSTSPCYCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81
>12_01_0856 + 8034181-8035425
Length = 414
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 497 RHSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRVI 381
RHSV+DD D +R+V+ A+ N+ A D V+
Sbjct: 242 RHSVEDDRTDVKRQKTRHVNSALANEIDAMNAKLIDTVV 280
>01_01_0218 + 1856104-1856700,1856814-1857452
Length = 411
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 68 LWPHSPSSPTPCPNVXLXSPYSVPAVHRAVQAAQAP 175
+WP SP SPT P+ + SP PA + A AP
Sbjct: 76 VWPPSPPSPTD-PSASMPSPTERPAAPMGLTAFLAP 110
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 300 GPDKGRKIPNRIPVRDENDCDTRAYIKD 383
GP +G +P+R P++D DC+ A I+D
Sbjct: 420 GPSRGGCVPSRNPLKDPGDCEAVA-IRD 446
>05_04_0035 + 17378541-17381276
Length = 911
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 212 GRGEDRQRGTVFGLPQLLQRKPTVPRGQQRARQGSQDPQQDPGARRERLRHPGLH---QG 382
G G T F PQ+ Q P+ Q A +Q PQ GA + PG H +
Sbjct: 748 GYGTSHPWHTGFNAPQVQQPSYGGPQSSQHAVGSTQPPQAQFGAPQAPPPLPGFHYQNRP 807
Query: 383 *LGQNSDAHER 415
GQ D H R
Sbjct: 808 EYGQAVDQHNR 818
>01_01_0653 -
4981517-4981738,4981841-4981976,4982066-4982121,
4982228-4982284,4982373-4982450,4982533-4982619,
4982707-4982767,4982862-4982950,4983048-4983145,
4983242-4983341,4983983-4984042
Length = 347
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 755 SVDQLLDNKTDVIILQGLRDSHCLVVVPGRHVL 657
SVD+L+D DV+ GL CL V G ++L
Sbjct: 100 SVDELVDQVADVLDFFGLGSVMCLGVTAGAYIL 132
>08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544
Length = 447
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 375 CKPGCRSRSRRAPGSCWGSCDPCRARC*PLGTVGLR 268
C CR +R PGSC G C++ PLG R
Sbjct: 217 CMSVCRPSARALPGSCRGDDGCCQSNI-PLGLASYR 251
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 779 VRXSCAQESVDQLLDNKTDVIILQGLRDSHCLVVVPGRHVL 657
V S SVD+L D +DV+ GL CL V G ++L
Sbjct: 93 VSPSSPVASVDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Frame = +2
Query: 206 LLGRGEDRQRGTVFGLPQLLQRKPTVPRGQQRARQG-----SQDPQQDPGARRERLRH-- 364
+LG G+ RGT G L++ + G + R+ + P+ G +R
Sbjct: 63 VLGGGQGGGRGTTAGAGGLVRGGSELAVGAELRRRVPTCHVNDFPELGIGGTPVLVRRWR 122
Query: 365 PGLHQG*LGQNSDAHERAHHSEQRQRHY 448
P H+ S H HH QRQRH+
Sbjct: 123 PRDHRDQHDHQSQRHHHRHHHHQRQRHH 150
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 284 PRGQQRARQGSQDPQQDPGARRERLRHPGLHQG*LGQNSDAHERAHHSEQRQRHYE 451
P QQR R S + P ER R+ G H ++ H+R HH R+ H++
Sbjct: 1273 PEPQQRPRPWSNNSSSYP----ERYRYDG-HD----RDHHRHDRRHHGHDRRHHFD 1319
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 692 HCLVVVPGRHVLEQQIHKKLLVEESHVRVHHCRLL 588
HCLVV PG + Q++ ++ ++ +R RLL
Sbjct: 820 HCLVVRPGARPVRQKVRRQAPERQAFIREEVARLL 854
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +3
Query: 678 YNKAVTITKSL--QDDNVGFVIKELVDRLLRA*XPNVFAY 791
YN A+++ +SL +D NV F+++ +D+L+R VFAY
Sbjct: 501 YNHAISVIQSLGEEDINVKFLVQ--LDKLIRLLETPVFAY 538
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 287 RGQQRARQGSQDPQQDPGARRERLRHPGLHQG*LGQNSDAHERAHHSEQRQR 442
R +R R+ S P + + R R PG H+G + + R HHS +R R
Sbjct: 620 RSPKRHREESLSPSKSRRSARAGSRSPGQHKG----SKLSPTRDHHSSRRSR 667
>07_03_1507 - 27228032-27228742
Length = 236
Score = 28.3 bits (60), Expect = 7.5
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Frame = +2
Query: 74 PHSPSSPTPCPNVXLXSPYSVPAVHRAVQAAQAPLYWSADRTCRLLGRG----EDRQRGT 241
P S S+ P V P +VP ++ PL + R R GRG R
Sbjct: 111 PSSASAAVPVVAVDRGEPKTVPLASPFPPLSRVPLRRAVGRRRRPSGRGCAAPVGRAGEA 170
Query: 242 VFGLPQLLQRKPTVPRGQQRARQGSQ---DPQQDP 337
FG P R P+ P Q A G+ DPQ+ P
Sbjct: 171 AFGAP---SRLPSGPGRQPPAPAGAADAWDPQRRP 202
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -1
Query: 493 IP*MTTMPTRSLTILVMSLALFGMMGALMSVTILTESSLM*ARVSQSFSSRTGILLGILR 314
+P ++ T + T +S+A F L+ + +L+ +S + Q SS G L G+L
Sbjct: 6 LPCSSSSSTTTTTTTKLSVAFF----RLLVILLLSFASPTSSCTEQEESSLIGFLEGLLP 61
Query: 313 PLSGPLLTSW 284
+G L TSW
Sbjct: 62 GHNGSLSTSW 71
>06_03_0675 - 23428948-23431389
Length = 813
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 575 QLVVGTVQQKLVL*LGSQKLNTLGLYRHSVDDDHADALVNDSRNVS 438
Q++ GT+ KLV S +L G Y DD H L +D +++S
Sbjct: 155 QIINGTI--KLVSSTSSNRLLVPGHYSFHFDDQHLLTLFDDEKDIS 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,935,755
Number of Sequences: 37544
Number of extensions: 447008
Number of successful extensions: 1655
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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