Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B17
         (301 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6JCT4 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    33   1.7  
UniRef50_A2FKN2 Cluster: Beige/BEACH domain containing protein; ...    30   8.9  

>UniRef50_Q6JCT4 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=1; Aleurodicus dugesii|Rep: NADH-ubiquinone
           oxidoreductase chain 2 - Aleurodicus dugesii (Doogie
           Howzer whitefly)
          Length = 318

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 128 FFFIVAYKI-WQRCMVNGYDYPLFFLFFNILYCFY 229
           F FI +YKI W   ++N Y Y +FF F+   +CF+
Sbjct: 280 FMFIYSYKIKWTYLIMNWYLYNIFF-FYVYFFCFF 313


>UniRef50_A2FKN2 Cluster: Beige/BEACH domain containing protein;
           n=1; Trichomonas vaginalis G3|Rep: Beige/BEACH domain
           containing protein - Trichomonas vaginalis G3
          Length = 1127

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 238 FKIIKTI*NIEKQKKKRIIITIYHTTLPYF-ISYNKKKN 125
           F +I T    EKQ  K+I+ T  H+TLP F + Y  + N
Sbjct: 201 FFLISTTETAEKQDYKQILYTYLHSTLPKFTLCYQVRTN 239


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,707,621
Number of Sequences: 1657284
Number of extensions: 2627938
Number of successful extensions: 5498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5496
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)