Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B17
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    24   4.2  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    24   4.2  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   5.5  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    23   7.3  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 176 HLPYNAAIFYKLQ*KKKLNVLYNDFKIYKXTY 81
           H+P  A IF      + L   Y D++ YK  Y
Sbjct: 681 HVPLQAIIFQNKLLLRTLENRYEDYESYKENY 712


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 95  IF*NHYTXHS-IFFFIVAYKIWQRCMVN 175
           IF NH    S I FF+   +I +RCM N
Sbjct: 591 IFPNHIQHSSGISFFVTLAEIMRRCMWN 618


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
          Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 18 FWTCVTSVITVCHLTRXLKLAV 83
          FW  + ++IT+C+  + L + +
Sbjct: 5  FWFAIATLITICYAAKPLDVKI 26


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 IWQRCMVNGYDYPLFFLFFNIL 217
           IW     +G D+P    FFN++
Sbjct: 137 IWHEQNTDGSDFPSMKTFFNVM 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 824,073
Number of Sequences: 5004
Number of extensions: 12513
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)