Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B17
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   0.61 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   3.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   4.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   4.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   5.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 185 YPLFFLFFNILYCF 226
           +PLFFL  N+ Y F
Sbjct: 431 FPLFFLAINVFYWF 444


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 185 YPLFFLFFNILY 220
           +P+ F+ FNILY
Sbjct: 452 FPVAFIIFNILY 463


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 21  WTCVTSVITVCHLTRXLKLAV 83
           W C  S++ +C ++    LAV
Sbjct: 147 WMCTASILNLCAISLDRYLAV 167


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 185 YPLFFLFFNILY 220
           +P+ F FFN+ Y
Sbjct: 423 FPIVFAFFNLAY 434


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 185 YPLFFLFFNILY 220
           +P+ F FFN+ Y
Sbjct: 423 FPIVFAFFNLAY 434


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 131 KKLNVLYNDF 102
           KKLN+ YN+F
Sbjct: 525 KKLNMFYNNF 534


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 131 KKLNVLYNDF 102
           KKLN+ YN+F
Sbjct: 525 KKLNMFYNNF 534


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = +2

Query: 104 NHYTXHSIFFFIVAYKIWQRCM 169
           +H+  HS    +  Y +W  C+
Sbjct: 575 SHFINHSCDPNLAVYGVWINCL 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,481
Number of Sequences: 438
Number of extensions: 795
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)