Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B16
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    83   2e-16
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    28   3.7  
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435     27   8.5  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 46/111 (41%), Positives = 59/111 (53%)
 Frame = +2

Query: 38  VSKAELACVYSALILVDXDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 217
           +S +E+AC  +ALIL D  + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 218 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 370
           ++GSG                                   SDDDMGF LFD
Sbjct: 61  SVGSG-GGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 2   GLRQLARSKLKMVSKAELACVYSALILVDXDVAVTGEKIST 124
           G+R+LA+     V+K +     S  +L+  DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
          Length = 415

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 32  KMVSKAELACVYSALILVDXDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 196
           +++   +L  V + + +VD  +  T +++     I KA    V+ + PGL AKA  GI
Sbjct: 155 RVLEGEKLPVVTAKITMVDLPLGATEDRVCGTIDIEKALTDGVKAFEPGLLAKANRGI 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,421
Number of Sequences: 37544
Number of extensions: 170232
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)