Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B15
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   5.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   9.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   9.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 559 DWENNVLRLGTNDAQYVEVIH 621
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 310 LTSGDYNVIVVDWSSF 357
           + +GDY V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 310 LTSGDYNVIVVDWSSF 357
           + +GDY V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 757 AATITHGKHYGNQCSTEAAITANN 828
           A+   + K+Y   CSTE  +T  N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 735 QPRL*SFCCNNYAWQTLRKSVQHRSGDNRK*LPRIIXEMGTAKLVK 872
           QP   S+C           + + ++GD  K +P I+  +G   L+K
Sbjct: 5   QPNRPSYCTWELNATNSPHTCRTKNGDYTKIMPDILTAIGQTPLIK 50


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 235 DIVVIIHGHSGTATTTINPIVK 300
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 235 DIVVIIHGHSGTATTTINPIVK 300
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,201
Number of Sequences: 438
Number of extensions: 5905
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)