Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B13
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    30   0.49 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   1.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   6.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   6.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   7.9  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +1

Query: 316 VCANSTEHKMVNCFYDGPAKPIEEKAMKIIEQYCPEIAKGGYSCCNYEQLNQLKVNIALA 495
           + A+ST + + N   +   +    K +    ++  + AK  Y   NY Q+N+++  +   
Sbjct: 3   ILASSTNYVLHNRLSNSQYEDARSKIVNFGGEFTNDAAKADYIFVNYSQINRVRRELRTI 62

Query: 496 ENLLGRCPTC 525
              L  C +C
Sbjct: 63  GTPLETCVSC 72


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 283 LAEDGHCIWYGVCANSTEHK--MVNCFY 360
           L  D HC+W+  C     HK   + CFY
Sbjct: 121 LRMDHHCMWFKNCVGFRNHKFFFLECFY 148


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 574 QSKYLKPVKTEQFNGTHRRISEIDYYLSKTFMDGIYNSCSEVKLTSTNERS 726
           +SK++K +  +   G+H+      +Y+SK   +G Y    +VK T T+  S
Sbjct: 5   RSKFVKALSLKDEQGSHKNGHSKSHYISK---NGSYVETDDVKHTDTHHSS 52


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 564 AGHSTDRLQKVLKARRASPQQIFRKGDIHFELVQLFVIAARITSFGYLGT-ILLNYFHCL 388
           A H T R+ K+L     SP +  +K  I  ++V        +T   YL T +L  +FHC 
Sbjct: 646 ASHFTRRIMKILLREFNSPDEEMKK--IVLKVVSQCASTDGVTP-EYLRTDVLPEFFHCF 702

Query: 387 FFDRFS 370
           +  R +
Sbjct: 703 WSRRMA 708


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -2

Query: 547 SASKSSESTSGISPANFPQGRYSL*AGSVVRNCSTNNLL---WLSRDNIAQL-FSLPF 386
           SAS+S E  S   P N P    S+   S +   +   LL   WLS + + Q+  SL F
Sbjct: 323 SASRSDEKGSKSDPINAPNSSSSISTNSPLAPTAYYKLLSKSWLSLEPVGQICISLSF 380


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = +1

Query: 751 GDACSAQRWFDNMGD------ASNYQVPFXINYKATDVPVDGY 861
           G AC A  W   +G+      ASN+ +PF I+   T     GY
Sbjct: 395 GIACVAMSWDHKIGELAAIIIASNFGIPFIISLGWTTASCAGY 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,448
Number of Sequences: 5004
Number of extensions: 66160
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)