Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B13
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    46   4e-05
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    29   3.6  
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96...    29   4.8  
08_02_0377 + 16481232-16481361,16482501-16482547,16482634-164827...    28   8.4  

>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
 Frame = +1

Query: 529 QNFLKPICG-MACAVDQSKYLKPVKTEQFNGTHRRISEIDYYLSKTFMDGIYNSCSEVKL 705
           Q+    I G + C VDQ   L   + +Q N T   ++ IDYY++ T+ + +YNSC +VK 
Sbjct: 88  QSLCPTITGDVCCTVDQFDTLHQ-QVQQVNNT-MTVNGIDYYVTSTYGEELYNSCKDVKF 145

Query: 706 TSTNERSIKVMCGQWGDACSAQRWFDNMGDASNYQVPFXINY 831
            + N R++  + G   +      +     D +    P+ I +
Sbjct: 146 GTLNTRAMDFLGGGAKNYKEWMAFIGRQADLNQIGSPYLITF 187



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +1

Query: 292 DGHCIWYGVCANSTEHKMVNCFYDGPAKPIEEKAMKIIEQYCPEIAKGGYSCCNYEQLNQ 471
           +G+C  YG+CA  ++ K++NC     A   +      I+  CP I   G  CC  +Q + 
Sbjct: 50  EGYCSMYGICAQRSDGKVLNCVNATKAVKPDTLFSARIQSLCPTIT--GDVCCTVDQFDT 107

Query: 472 LKVNIALAENLL 507
           L   +    N +
Sbjct: 108 LHQQVQQVNNTM 119


>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +1

Query: 556 MACAVDQSKYLKPVKTEQFNGTHRRISEIDYYLSKTFMDG---IYNSCSEVKLTSTNERS 726
           MA AV+   +L   +T Q + +  +   +DYYL KT+      I NSC  V + + +   
Sbjct: 240 MATAVE---HLVTGETMQISTSREQRRSMDYYLQKTYYKTASLISNSCKAVAILAGHTAD 296

Query: 727 IKVMCGQWG 753
           + ++  ++G
Sbjct: 297 VSMLAYEYG 305


>07_01_0129 -
           959600-959625,960100-961428,961585-961657,962185-962226
          Length = 489

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 352 CFYDGPAKPIEEKAMKIIEQYCPE--IAKGGYSCCN 453
           CF+DGP + +E   ++ + + CPE  +    Y  C+
Sbjct: 425 CFFDGPWQRVEPAYVRRVNKICPEYLVLLDDYKICS 460


>08_02_0377 +
           16481232-16481361,16482501-16482547,16482634-16482711,
           16482826-16482896,16483005-16483086
          Length = 135

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 322 HKRRTICSDHLRPEQTGYVLLTPIEKTRQI 233
           H    I SD+  PE TGY LL  ++K+ ++
Sbjct: 61  HDVNMIVSDYCMPEMTGYDLLMEVKKSPRL 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,301,602
Number of Sequences: 37544
Number of extensions: 433198
Number of successful extensions: 1084
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)