Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B13
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)               156   3e-38
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     29   3.7  
SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)                      29   6.5  
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  29   6.5  

>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score =  156 bits (378), Expect = 3e-38
 Identities = 68/183 (37%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
 Frame = +1

Query: 289 EDGHCIWYGVCANSTEHKMVNCFYDGPAKPIEE-KAMKIIEQYCPEIAKGGYSCCNYEQL 465
           ++G+C+WYG C    +   +NC Y+ PAK + + KAM I++  CP+IA+GG +CC+  QL
Sbjct: 28  KEGYCVWYGQCTEPGQTPALNCLYNEPAKELNDTKAMNILKNLCPKIAQGGKTCCDLRQL 87

Query: 466 NQLKVNIALAENLLGRCPTCFQNFLKPICGMACAVDQSKYLKPVKTEQFNG-THRRISEI 642
             L  N+        RCP C+QN L   C   C+ DQS ++ P     F   T   I+ I
Sbjct: 88  EALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSPDQSLFMDPTSVVGFPPYTPYMINAI 147

Query: 643 DYYLSKTFMDGIYNSCSEVKLTSTNERSIKVMCGQWGDACSAQRWFDNMGDASNYQVPFX 822
           +YY++    D ++ SC +V     NE+ + ++CGQ  + CS Q+  + MG  SN Q PF 
Sbjct: 148 NYYIAPEHKDQLFKSCKDVIFPGNNEKILNLLCGQSAETCSPQKLLEYMGSTSNGQAPFD 207

Query: 823 INY 831
           I+Y
Sbjct: 208 IHY 210



 Score =  156 bits (378), Expect = 3e-38
 Identities = 68/183 (37%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
 Frame = +1

Query: 289 EDGHCIWYGVCANSTEHKMVNCFYDGPAKPIEE-KAMKIIEQYCPEIAKGGYSCCNYEQL 465
           ++G+C+WYG C    +   +NC Y+ PAK + + KAM I++  CP+IA+GG +CC+  QL
Sbjct: 248 KEGYCVWYGQCTEPGQTPALNCLYNEPAKELNDTKAMNILKNLCPKIAQGGKTCCDLRQL 307

Query: 466 NQLKVNIALAENLLGRCPTCFQNFLKPICGMACAVDQSKYLKPVKTEQFNG-THRRISEI 642
             L  N+        RCP C+QN L   C   C+ DQS ++ P     F   T   I+ I
Sbjct: 308 EALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSPDQSLFMDPTSVVGFPPYTPYMINAI 367

Query: 643 DYYLSKTFMDGIYNSCSEVKLTSTNERSIKVMCGQWGDACSAQRWFDNMGDASNYQVPFX 822
           +YY++    D ++ SC +V     NE+ + ++CGQ  + CS Q+  + MG  SN Q PF 
Sbjct: 368 NYYIAPEHKDQLFKSCKDVIFPGNNEKILNLLCGQSAETCSPQKLLEYMGSTSNGQAPFD 427

Query: 823 INY 831
           I+Y
Sbjct: 428 IHY 430


>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 466 NQLKVNIALAENLLGRCPTCFQNFLKPICGMACAVDQSKYLKPVKTEQFNGTHRRISEID 645
           NQ +V   +A  LL R  T   +FLK I      + +   LK +  EQ +   ++I +  
Sbjct: 24  NQAEVR-QMAAVLLRRIFTATVDFLKKIDENTQNLMKESLLKGIHEEQDSNVRKKICDAV 82

Query: 646 YYLSKTFMDGI-YNSCSEV 699
             LSK+F+D   YN   E+
Sbjct: 83  SELSKSFLDDDGYNHWQEL 101


>SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)
          Length = 310

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 562 CAVDQSKYLKPVKTEQFNGTHRRISEIDYYLSKTFMDGIYNSCSEVKLTSTNERSIKVMC 741
           C    ++ L  + T+   GT    + IDY+ +KT    +  SC      + +   + + C
Sbjct: 199 CQKKLTRTLHIITTQDDKGT----AVIDYFTAKTA--NLPTSCGSFTRGADDNSMLAIGC 252

Query: 742 GQWG 753
           GQWG
Sbjct: 253 GQWG 256


>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 216 FFATISICLVFSIGVSRTYPVCSG 287
           FF   SI L F +GV  TYP+  G
Sbjct: 236 FFVNGSIPLFFELGVESTYPIAEG 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,637,757
Number of Sequences: 59808
Number of extensions: 511558
Number of successful extensions: 1451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)