Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B13
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    85   8e-17
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    69   4e-12
Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    35   0.065
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    29   5.7  
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    28   9.9  
AF039047-5|AAY86265.1|  188|Caenorhabditis elegans Hypothetical ...    28   9.9  

>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
 Frame = +1

Query: 292 DGHCIWYGVCANSTEHKMVNCFY-DGPAKPIE----EKAMKIIEQYCPEIAKGGYS-CCN 453
           D  CI  G+C   TE+    C   D   +P        A + + ++CP +  G    CC 
Sbjct: 19  DAGCIMRGLCQKHTENAYGPCVTNDTNVEPTAFDKTHPAYEKMVEFCPHLLTGDNKLCCT 78

Query: 454 YEQLNQLKVNIALAENLLGRCPTCFQNFLKPICGMACAVDQSKY-----LKPVK-----T 603
             Q   L   IA A ++LGRCP+CF NF K  C   C+ +Q  +     +KP++     T
Sbjct: 79  PSQAEGLTKQIAQARHILGRCPSCFDNFAKLWCEFTCSPNQQDFVSISEMKPIEKKEGFT 138

Query: 604 EQFNGTHRRISEIDYYLSKTFMDGIYNSCSEVKLTSTNERSIKVMCGQWGDACSAQRWFD 783
            ++      ++ ++Y LS  F +G+++SC +V  T   + +++VMC      C+   W +
Sbjct: 139 PEYQPAEAYVNTVEYRLSTDFAEGMFSSCKDV--TFGGQPALRVMC--TSTPCTLTNWLE 194

Query: 784 NMG 792
            +G
Sbjct: 195 FIG 197


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
 Frame = +1

Query: 394 MKIIEQYCPEIAKG---GYSCCNYEQLNQLKVNIALAENLLGRCPTCFQNFLKPICGMAC 564
           M   E+YC  + +       CC   QL  +   I+ A  +LG CP+CF NF K  C   C
Sbjct: 66  MARFEKYCSYLVQEEDKAQVCCTELQLKGMTDRISNAATILGSCPSCFDNFAKLWCQFTC 125

Query: 565 AVDQSKYLKPVKTEQFNGTHRRISEIDYYLSKTFMDGIYNSC 690
           + DQSK++K ++T    G    + ++++ +++ F++G+Y SC
Sbjct: 126 SPDQSKFMKVMET---TGPKNVVVKMEFKVNRDFVEGLYESC 164


>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 307 WYG---VCANSTEHKMVNCFYDGPAKPIEEKAMKIIEQYCPEIAKGGYSC 447
           WYG   V A +++ +  +CF DG A+P ++  ++   + CP++   G+ C
Sbjct: 58  WYGTTIVIAGTSDARPASCFSDGTARPNDQGMVRAAVELCPKLC--GFCC 105


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 442 SCCNYEQLNQLKVNIALAENLLGRCPTCF-QNFLKPICG 555
           SC  + ++ + + N  +AEN    C +C+ Q+ L+ +CG
Sbjct: 618 SCAGWARVGECQKNPWMAENCRSSCNSCYTQSELRRMCG 656


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 414 LSRDSQRRLFVLQ-LRTTEPAQSEYRPCGKFAGEMPDVLSELFEADLWNGLRRRSEQILE 590
           L+++ + +L++L  +  T+   S+  P  K    + D+   L E DL+   R+R  Q+++
Sbjct: 550 LTKNIKYKLYILDAIPRTKYVVSQIAPMVKSGANLTDIDKLLVETDLYKMARKRHAQLIK 609


>AF039047-5|AAY86265.1|  188|Caenorhabditis elegans Hypothetical
           protein K11D12.13 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 412 YCPEIAKGGYSCCNYEQLNQL----KVNIALAENLLGRCPTCFQNFLKP-ICGMACAVDQ 576
           Y P+ AKG  S C+YE   +     K NI  A    G C     N+  P  CG  C VD+
Sbjct: 23  YLPQ-AKGTSSNCSYEASIRYHFDPKTNICHAFKYEG-CGGNVNNYETPGDCGQNCNVDE 80

Query: 577 SKYLK 591
             Y++
Sbjct: 81  KTYIQ 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265,598
Number of Sequences: 27780
Number of extensions: 378540
Number of successful extensions: 1077
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)