Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_B12
(581 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 27 7.4
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 7.4
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 27 7.4
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 7.4
AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical ... 27 7.4
AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical... 27 7.4
U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF047657-6|AAK18946.1| 337|Caenorhabditis elegans Serpentine re... 27 9.7
AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical ... 27 9.7
AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical ... 27 9.7
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 213 ETSQRSIFFGSGTTTDYGYYSPRP 284
E SQR+ GSG++ YG Y P P
Sbjct: 100 ERSQRATGSGSGSSGGYGTYPPAP 123
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 124 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 303
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 2468 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 2524
Query: 304 ASITAGGIG 330
I A G G
Sbjct: 2525 GQIPAYGFG 2533
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform a protein.
Length = 1633
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 124 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 303
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 1399 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 1455
Query: 304 ASITAGGIG 330
I A G G
Sbjct: 1456 GQIPAYGFG 1464
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 124 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 303
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 7314 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 7370
Query: 304 ASITAGGIG 330
I A G G
Sbjct: 7371 GQIPAYGFG 7379
>AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical
protein K05F6.11 protein.
Length = 343
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 241 DPGQQLIMGIIARDLDHSDAEASI 312
D G+QL++G + RDL H D + +
Sbjct: 318 DNGKQLLIGTVFRDLTHCDIDVPL 341
>AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical
protein E01A2.8 protein.
Length = 499
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 241 DPGQQLIMGIIARDLDHSDAEASI 312
D G+QL++G + RDL H D + +
Sbjct: 474 DNGKQLLIGTVFRDLTHCDIDVPL 497
>U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical
protein C43H6.4 protein.
Length = 627
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 403 TCRFQVGSLIQSLVGFSTLCWHKR 332
T R+ +GSL+Q + ST+C+ K+
Sbjct: 39 TIRYILGSLLQDYINESTMCYWKK 62
>AF047657-6|AAK18946.1| 337|Caenorhabditis elegans Serpentine
receptor, class h protein243 protein.
Length = 337
Score = 27.1 bits (57), Expect = 9.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -1
Query: 233 NTSLTRFLSGMALYS----AFSCHRSLLLKLVPTIRSLHCIT-QTKDKNMKIKTGANFIL 69
N S++ F+ L S AFSCH ++++ +I +CI QT K+K IL
Sbjct: 3 NCSISPFIDSSYLASPNFVAFSCHIITIIEIPLSIYGAYCILFQTP---AKMKPVQFLIL 59
Query: 68 LLFFLKRLPQCVMCHV 21
L F L +C +
Sbjct: 60 NLHFWNTLSDLFLCFI 75
>AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical
protein T27A1.2 protein.
Length = 283
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 442 FLIENYGLKYNFFTCRFQVGSLIQSLV 362
F+++N+ LK+ F C FQ+ + L+
Sbjct: 111 FILKNFDLKFGFSNCSFQLVGFNKKLI 137
>AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical
protein C05C8.6 protein.
Length = 581
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 428 VFNQEVFYHFMFNLDFCIQYS 490
+FN F+ F +D+C+QYS
Sbjct: 173 IFNAAYFFQFTDLIDYCMQYS 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,983,537
Number of Sequences: 27780
Number of extensions: 253346
Number of successful extensions: 553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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