Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_B09
(927 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 78 1e-29
SB_28137| Best HMM Match : rve (HMM E-Value=0.00026) 31 1.7
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 25 2.9
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 30 3.1
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 29 5.3
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 9.3
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 78.2 bits (184), Expect(2) = 1e-29
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = +1
Query: 139 FPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 255
+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 606 YPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 70.5 bits (165), Expect(2) = 1e-29
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +1
Query: 355 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 534
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 535 VK 540
VK
Sbjct: 703 VK 704
>SB_28137| Best HMM Match : rve (HMM E-Value=0.00026)
Length = 293
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 89 HRXHTLRVPETPGPQPPSPCNVRP 160
+R H VP TP P PPSP + P
Sbjct: 235 NRQHIRSVPPTPSPTPPSPTHPSP 258
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.6 bits (51), Expect(2) = 2.9
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 140 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 298
+PC ++ C + +S+ V ++K P P TL ++G + +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450
Score = 23.8 bits (49), Expect(2) = 2.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 122 PGPQPPSPCNVRP 160
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 587 NPINAELVYLSRAVF---ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSS 417
NP L Y + A+F + A S QD+ +H NS + N +P+ S I ++
Sbjct: 69 NPSFGPLNYATMAIFPPNTVPAPPQDSTQDYREIHTNSFYFQHQMSNTLPKEES-IQQAD 127
Query: 416 RRSPLSAIRV 387
+P + V
Sbjct: 128 ESAPHDILSV 137
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -3
Query: 178 RNRFYAGPNIAW--GRWLRPRSLRXSK 104
R F+ PN+A G+WL P+SLR S+
Sbjct: 947 REGFFNNPNLAGCKGQWLGPKSLRASR 973
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 166 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 285
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 280 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 408
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +1
Query: 307 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 486
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 487 LLCTVLKSCGEECVIAVKANTALD 558
T KS GEE V A ++ +LD
Sbjct: 344 SAATYGKSDGEENV-AQESEESLD 366
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 515 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 384
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,614,398
Number of Sequences: 59808
Number of extensions: 598092
Number of successful extensions: 1487
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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