Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B05
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    32   0.085
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.60 
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    29   1.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.4  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.2  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.2  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    26   5.6  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   5.6  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   7.4  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   9.8  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   9.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.8  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 17/80 (21%), Positives = 39/80 (48%)
 Frame = +1

Query: 418 EAEDAIILAKALRSRPPVNMLPAAKAGTFFARDNLSNFIDWCRKALGILECLLFETDDLC 597
           + +  +IL +  +     N+        F   +N+S FI++ ++ + +    +F+T DL 
Sbjct: 30  QLQSGVILCRICKEALGANIRYKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89

Query: 598 LRKNEKHVVLCLLEVARKGA 657
            R+N++ V+  +   +R  A
Sbjct: 90  ERRNDEQVLRSIHSFSRYAA 109


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
 Frame = -3

Query: 755 PRAESSGRNSSPANSLSICFSICTSSGAGIPSTAPFLATSSKQRTTCFSFFLXXXXXXXX 576
           P + SS  +SSP++S S   S   SS +   S+    ++SS  +++  S           
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSS--------SSS 205

Query: 575 XXXXKMPSALRHQSMKLERLSLAKNVPALAA--GSMLTGGRERSAFARMIASSASGCGAS 402
                 PS+ +  S       +    PA ++  G++++  +  S      ASSA+   +S
Sbjct: 206 SKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTASTDDSSSASSATSSVSS 265

Query: 401 RINLAESLTAFACLHKATPVSSLSRKLSAVILSSGYSTV 285
            ++ A S  + +    +  VSS +   ++  L +G + +
Sbjct: 266 VVSSASSALSASASSASASVSSSASSDASPALKTGINAL 304


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 653 APCLVCQHRY*CRWRSRLRENW-PG 724
           +PCL+ QH Y C+  S+L   W PG
Sbjct: 669 SPCLMLQHSYHCKPNSKLNVFWMPG 693


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 4/172 (2%)
 Frame = -3

Query: 764 TVNPRAESSGRNSSPANSLSICFSICTSSGAGIPSTAPFLATSSKQ---RTTCFSFFLXX 594
           +V+    SS  +S PA+S S   S   SS + IPS++  + +SS      ++  S  L  
Sbjct: 9   SVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSS 68

Query: 593 XXXXXXXXXXKMPSALRHQSMKLERLSLAKNVPALAA-GSMLTGGRERSAFARMIASSAS 417
                      + S +   S +    S +    + A   S  +     S+ +  ++SS+S
Sbjct: 69  SSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSS 128

Query: 416 GCGASRINLAESLTAFACLHKATPVSSLSRKLSAVILSSGYSTVSHSARSSF 261
              AS  + +  +++ +  H ++  SS S   S+ + +SG S+ +    S++
Sbjct: 129 SLVAS--SSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTY 178


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
 Frame = -3

Query: 731 NSSPANSLSICFSICTSSGAGIPSTAPFLATSSKQRTTCFSFFLXXXXXXXXXXXXKMPS 552
           +SSP++S S   +  + S + IPST+   +++S   ++  S                  S
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278

Query: 551 AL---RHQSMKLERLSLAKNVPALAAGSMLTGGRERSAFARMIASSASGCGASRINLAES 381
           +       S  +   S + + P   + ++ +     S+F+  ++SS+    +S  +   S
Sbjct: 279 SSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTS 338

Query: 380 LTAFACLHKATP-VSSLSRKLSAVILSSGY-STVSHSARSS 264
            ++      ++P  SS S   S+   SS + STVS S+ +S
Sbjct: 339 SSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTS 379


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 485 AGSMLTGGRERSAFARMIASSASGCGASRINLAE 384
           AGS ++GG   S     +AS+ +G G  ++ + E
Sbjct: 90  AGSRISGGNSNSHLPSGVASAPAGLGIDKVAVGE 123


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 428 SSASGCGASRINLAESLTAFACLHKATPVSSLSRKLSAVILSSGYSTVSHSARSS 264
           +S+S   +S   ++ S+T+      ++ VSS S   S  I S+   TVS S+ S+
Sbjct: 155 TSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNST 209


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 472 NMLPAAKAGTFFARDNLSNFIDWCRKALGILECLLFETDDLCL-RKNEK 615
           NM P  + G  F R+  + F DWCR+       +   T  L L +KNE+
Sbjct: 164 NMCP--QVGDGFNRNYWAYFEDWCRRLTSKYGSVTIMTGPLYLPKKNER 210


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 424 EDAIILAKALRSRPPVNMLPAAKAGTFFARD--NLSNFIDWCRKALGILECLLFETDDLC 597
           EDA I+ KA R+ P V ++   +          +L  F+ W + A G+L+ +   T +  
Sbjct: 213 EDAGIV-KAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAA 271

Query: 598 -LRKN 609
            L+KN
Sbjct: 272 QLKKN 276


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 439 LAKALRSRPPVNMLPAAKAGTFFARD--NLSNFIDWCRKALGILECLLFETDDLC-LRKN 609
           + KA R+ P V ++   +          +L  F+ W + A G+L+ +   T ++  L+KN
Sbjct: 217 IVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKN 276


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 337 LDTGVALCRHANAVRDSAKLILDAP 411
           ++TG   CRHA+AV+ +A+     P
Sbjct: 82  VNTGSRTCRHADAVKAAAEAATTTP 106


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 628 CLLEVARKGAVLGMPAPLLVQMEKQIERELAGEE-LRPDDSALGLTVPTGPXPQLV 792
           C L + R  A++   + LL +  KQ+E E+  E+ LR     L L  P     Q+V
Sbjct: 289 CTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHNQVV 344


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 812 KLLRSLVTNWGWGPVGTVNPRAESSGRNSSPANSLSICFSIC 687
           K+L  +  N G   + + NP+   + R   P N L+  +++C
Sbjct: 103 KILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVC 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,099
Number of Sequences: 5004
Number of extensions: 58885
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)