Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_B05
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0603 - 18895998-18896392,18896491-18896617 32 0.63
12_02_0591 + 20864861-20867329 31 1.1
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 30 1.9
06_03_0782 + 24537212-24537490 29 3.4
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 29 3.4
11_01_0734 - 6078023-6078203,6078645-6078866,6079323-6079390,607... 29 5.9
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 28 7.8
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168 28 7.8
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003 28 7.8
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402... 28 7.8
>09_04_0603 - 18895998-18896392,18896491-18896617
Length = 173
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 286 TVLYPELRITADNFLDRLDTGVALCRHANAVRDSAKLILDAPQPEAEDAIILAKALRSRP 465
T L P + + D R+ T + C A S K P P +DA++ A+ P
Sbjct: 29 TPLLPRVHLAGDG-TGRMATTIGFCPRLRAAPPSCKKAEADPAPSLQDAVVAVDAVLRAP 87
Query: 466 P 468
P
Sbjct: 88 P 88
>12_02_0591 + 20864861-20867329
Length = 822
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -3
Query: 491 LAAGSMLTGGRERSAFARMIASSASGCGASRINLAESLTAFACLHKATPVSSLSR---KL 321
LA M G R R A A M+A A+G G +AE+ + C H + + LSR L
Sbjct: 746 LAVAMMTEGRRRRGAVAVMMA--AAGMGPVLRRVAETTSELECFHVFSGSAGLSRHAVSL 803
Query: 320 SAVI 309
SA++
Sbjct: 804 SALV 807
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 303 FGVQHRQPFSQVLLHSVEVLLRRFERPEGPSLQEYGTSARHFFICDQHTDITG 145
FG+ HR+ +QV + LR F+ E PS TS+ + ++TG
Sbjct: 182 FGMSHREALAQVTAQASHSPLRMFDHTEQPSFSAAPTSSEAMQHMNAAVNMTG 234
>06_03_0782 + 24537212-24537490
Length = 92
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 473 LTGGRERSAFARMIASSASGCGASRINLAESLTAFACLHK 354
++GGR+R R +A++A+G G+ R + + A LH+
Sbjct: 1 MSGGRKREWIRRKVAAAAAGSGSPRWSRRVRAVSTAVLHR 40
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -3
Query: 437 MIASSASGCGASR---INLAESLTAFACLHKATPVSSLSRKLSAVILSSGYSTVSH 279
M+ +S C A R +++A S F+ LH+ V+ LS + + LSS S+ +H
Sbjct: 152 MVHTSTGCCSAERCPPLSIATSSVDFSSLHRHGAVAVLSSRTAVSPLSSSSSSPAH 207
>11_01_0734 -
6078023-6078203,6078645-6078866,6079323-6079390,
6079919-6079981,6095129-6095782
Length = 395
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -2
Query: 432 SIFGLRLWSVEDQLSGVPHGVRVPAQS-DARVESVEEVISGDPEFGVQHRQPFSQVLLHS 256
++ G+ +W+ LS + + V A++ +A ++ V+ E +H + ++ ++LH
Sbjct: 253 TLHGIIIWA--RCLSSLSSSIHVNARNVEAMYTAITMVVQ---EMHARHVKHYNFLMLHG 307
Query: 255 VEVLLRRFERPEGPS--LQEYGTSARHFFICDQHT 157
+ + R F P PS + +G F +C HT
Sbjct: 308 LIIWARAFLPPGLPSSGIAHHGARHSSFRLCRSHT 342
>08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 418 EAEDAIILAK--ALRSRPPVNMLPAAKAGTFFARDNLSNFIDWCRKALGILE 567
E++ AI AK LRS P LPA + ++ D L + +C A+G+ E
Sbjct: 1011 ESQLAIYDAKLECLRSWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFE 1062
>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
Length = 536
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 177 KNGERWCRTPG-GSALQAVQIV*GVPLRYEGGPG 275
KNGE+W T G G+ AV + VP R +G G
Sbjct: 363 KNGEKWTETVGIGTGSPAVVVSAFVPFRVDGDFG 396
>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
Length = 385
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = -3
Query: 515 SLAKNVPALAAGSMLTGGRERSAFARMIASSASGCGASRINLAESLTAFACLHKATPVSS 336
SL P AAGS+ GGR R + + A+G RI FA + P +
Sbjct: 115 SLIPAFPPAAAGSLFAGGRGRKDPQTVFVAGATGQAGVRIAQTLLRQGFA-VRAGVPDLA 173
Query: 335 LSRKLSAVILSSGYSTVS 282
+++L+ L+S Y +S
Sbjct: 174 SAQELAR--LASAYRLIS 189
>04_03_1004 +
21637910-21638269,21638424-21638579,21640108-21640202,
21640478-21640505,21640725-21640752,21642353-21642363
Length = 225
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 163 LITNKKMASAGAVLLEARPFRPFKSSEEYLYAMKED----LAEWLTVLYPELRITADNFL 330
L+T ++ ASA ++LL A P P S + + + KED E L EL + + +
Sbjct: 45 LLTTRRAASAASLLLAALPPFPASSPQLPVASAKEDDEAEAREGEGELELELELELERYT 104
Query: 331 DRLDTGVALCR 363
DR D G L +
Sbjct: 105 DR-DEGFTLLK 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,348,421
Number of Sequences: 37544
Number of extensions: 480087
Number of successful extensions: 1460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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