Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B05
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 411  WSVEDQLSGVPHGVRVPAQSDARVESVEEVISGDPEFGVQHRQPFSQVLLHSVEVLLR 238
            WS +D +  +  G R+PA  D   E++ +++    +    HR  F+  L  +++ L+R
Sbjct: 842  WSNQDVIKSIEKGYRLPAPMDC-PEAIYQLMLDCWQKERTHRPTFAN-LTQTLDKLIR 897


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 749 AESSGRNSSPANSLSICFSICTSSGAGIPSTAPFLATSSKQRTTCFS 609
           +   G  +SP +++  C S    SGA    +A  L++ S  +T+  S
Sbjct: 575 SNDEGGKTSPNSAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSAS 621


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 393 VDPRRSTTGGRRCYHSGKSTALPSSGQHAPG 485
           ++P  S       +HS  S+AL  S  H+PG
Sbjct: 273 LNPNSSLQPSLASHHSHLSSALGRSACHSPG 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,641
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)