Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_B04
(793 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 26 0.46
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 1.1
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 24 1.9
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 3.3
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 7.5
DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein ... 21 9.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 9.9
AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein ... 21 9.9
AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific pro... 21 9.9
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 9.9
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 25.8 bits (54), Expect = 0.46
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +1
Query: 415 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 549
++ YM Q + + M+P C+ ++ C RK K E
Sbjct: 28 IDMYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRKEKKAQKE 72
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.6 bits (51), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 164 VFGLTLRECTLFYLFIF*LNCIPIN 90
VF +TLR TLFY + C+ I+
Sbjct: 227 VFNITLRRKTLFYTVNLIIPCVGIS 251
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/45 (22%), Positives = 19/45 (42%)
Frame = +1
Query: 415 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 549
++ YM Q + + M+P C+ ++ C RK + E
Sbjct: 231 IDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKE 275
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 161 FGLTLRECTLFYLFIF*LNCIPIN 90
F +TLR TLFY + C+ I+
Sbjct: 227 FNITLRRKTLFYTVNLIVPCVSIS 250
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 161 FGLTLRECTLFYLFIF*LNCIPI 93
F +T+R TLFY + C+ I
Sbjct: 241 FNITMRRKTLFYTVNLIIPCVGI 263
>DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein 3
protein.
Length = 130
Score = 21.4 bits (43), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 201 LHSDRYIGGWKKCI 160
LHSDR + + KC+
Sbjct: 38 LHSDRLLNNYFKCL 51
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 161 FGLTLRECTLFYLFIF*LNCIPIN 90
F +T+R TLFY + C+ I+
Sbjct: 236 FNITMRRKTLFYTVNIIIPCMGIS 259
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 161 FGLTLRECTLFYLFIF*LNCIPIN 90
F +T+R TLFY + C+ I+
Sbjct: 236 FNITMRRKTLFYTVNIIIPCMGIS 259
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 161 FGLTLRECTLFYLFIF*LNCIPIN 90
F +T+R TLFY + C+ I+
Sbjct: 232 FNITMRRKTLFYTVNLIIPCMGIS 255
>AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein
protein.
Length = 130
Score = 21.4 bits (43), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 201 LHSDRYIGGWKKCI 160
LHSDR + + KC+
Sbjct: 38 LHSDRLLNNYFKCL 51
>AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific
protein 3c precursor protein.
Length = 130
Score = 21.4 bits (43), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 201 LHSDRYIGGWKKCI 160
LHSDR + + KC+
Sbjct: 38 LHSDRLLNNYFKCL 51
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 707 SNNNIRKNENS*LVSGSSQNG 769
SNNN N N+ +G++ NG
Sbjct: 238 SNNNNNNNNNNNNNNGANDNG 258
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,378
Number of Sequences: 438
Number of extensions: 4340
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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