Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_B02
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 175 6e-45
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 54 2e-08
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 28 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 28 1.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.1
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 26 5.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 7.2
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.6
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 9.6
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 9.6
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 9.6
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 175 bits (426), Expect = 6e-45
Identities = 83/196 (42%), Positives = 125/196 (63%), Gaps = 1/196 (0%)
Frame = +1
Query: 34 KPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKAT 213
KPG N+ VT+ + KI+ YGCKP+ GMLSHQ ++ IDG+K +I NPS++QR E + T
Sbjct: 160 KPGNTNWQVTDIVDKIATSYGCKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFT 219
Query: 214 LEKYEVYAMDVLISTGEAVG-REMDTRCTIYKKTDEVYQLKLKASRMFYSEVRNKHGNMP 390
E+ EVY +D+L+ST + + D IYKKTD Y LKL+ASR YSE++ K G P
Sbjct: 220 FEEGEVYGVDILVSTSPSGKVKRSDIATRIYKKTDTTYMLKLQASRKVYSEIQTKFGPFP 279
Query: 391 FNLRSFDKETSARLGVVECINHKLIEPFQVLYERPGELVAQFKFTALLLPSGTHRITGLP 570
F+ R+ ++ +G+ EC +HKL+ P++VL ++ G +VA+F T L GT ++
Sbjct: 280 FSTRNISFDSRTNMGLNECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILSDSE 339
Query: 571 FDKSQCKSERSIKDPE 618
+ KS++ ++DPE
Sbjct: 340 PKEDFIKSDKKVEDPE 355
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 54.0 bits (124), Expect = 2e-08
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Frame = +1
Query: 226 EVYAMDVLISTG--EAVGREMDTRCTIYKKTDEV-YQLKLKASRMFYSEVRNKHGNMPFN 396
E + +D+ +S+ ++ D + T+Y V Y LKLKASR SE++ + PF+
Sbjct: 263 EAWLIDISMSSQPISSLKEHPDLKPTLYIHDVNVSYMLKLKASRSLLSEIKKEKSVFPFH 322
Query: 397 LRSFDKETSARLGVVECINHKLIEPFQVLYERPGELVAQFKFTALLLPSGTHRITGL--P 570
S E + LG+ E + ++ P VL P ++A+ + T + P+ + + L P
Sbjct: 323 FGSLSSERNL-LGLRELTDRHILVPMPVLISSPSNVIAREELTVITQPNPSSDLLCLTVP 381
Query: 571 FDKSQCKSERSIKD 612
S KS+ S++D
Sbjct: 382 TPPSYVKSDFSLED 395
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/109 (20%), Positives = 49/109 (44%)
Frame = +1
Query: 214 LEKYEVYAMDVLISTGEAVGREMDTRCTIYKKTDEVYQLKLKASRMFYSEVRNKHGNMPF 393
+ K++ + + ++ V + +DT+ ++KK + Y+++ + Y R PF
Sbjct: 911 INKFKSFGIKIMKRANLIVDQSLDTQRRVWKKYVQNYRIQKLTEEISYKNYR-----CPF 965
Query: 394 NLRSFDKETSARLGVVECINHKLIEPFQVLYERPGELVAQFKFTALLLP 540
R+ +KE + +V + KL+ +++ +L F L LP
Sbjct: 966 LCRNIEKERTVE-QLVSRLQTKLLRSAELVSGLQAKLCLD-SFKLLYLP 1012
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 440 LSASTTNSLSHSRFSMSVQENWWHSLSSRLFCF 538
L + T++L H+RF + +W H+ + ++CF
Sbjct: 4028 LLPTMTHTLPHNRFRLFFFLSWLHATLAEIYCF 4060
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 329 NWYTSSVFLYIVHLVSI 279
+W+TSSVFL+ LVSI
Sbjct: 432 HWFTSSVFLFTASLVSI 448
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 293 HLVSISRPTASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFSP 150
H S + TASP+ +RTS ++Y + + S C S P
Sbjct: 208 HGFSNALSTASPIPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEP 255
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 5.5
Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = +1
Query: 43 TENYAVTEAIQKIS-AEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLE 219
T + AV + IQ ++ G + +L Q K+ + GE+S+++ + + T+
Sbjct: 253 TFDVAVIDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEESVVKLVRSIAKMTQDDFTVY 312
Query: 220 KYE-VYAMDVL-ISTGEAVGREMDTRCTIYKKTDEVYQLKLKASRMFYSEVRNKHGNMPF 393
+YE + + V S + D C + ++ LK K + + +G++P
Sbjct: 313 RYERLNPLHVAEKSLNGKLSELKDGDCVVAFSRKNIFTLKSKIDQALGKKSAVIYGSLPP 372
Query: 394 NLRS 405
+R+
Sbjct: 373 EVRN 376
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 177 WILYNTLLSINTELLQLV*EHTLNWLTTIFSTYF 76
W++Y+ L+ + E + V WL + T+F
Sbjct: 1095 WVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFF 1128
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 9.6
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Frame = +1
Query: 34 KPGTENYAVTEAIQ--KISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEK 207
K EN E + K + PI+ QLK+F +I ++ E + + EK
Sbjct: 474 KQAVENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNITKDGLELEETDEEK 533
Query: 208 ATLEK----YEVYAMDVLISTGEAV 270
A EK YE +A + G+ V
Sbjct: 534 AAREKLEKEYEEFAKQLKTILGDKV 558
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 287 VSISRPTASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFSPSIRNCFSWCES 117
V I PTA V + TS+ +SY ++VA + S G + + C S C S
Sbjct: 785 VMIVEPTAGYVTVTTSLGSSSYATTVATASG---TSTGTVLQVVPSLFPGCNSKCTS 838
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 397 LRSFDKETSARLGVVECINHKLIEPFQVLYERPGELVAQFKF 522
+R+ D+E+ LG+++ + H+ +PFQ + P E A F
Sbjct: 40 IRAADRES---LGILQNVTHEASQPFQP-QDHPSEAAALLMF 77
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 531 KSRELKLCHQFSWTLIENLEWLNEF 457
KS L LC W + + LEW+N F
Sbjct: 502 KSHTLGLC----WRMYDRLEWINSF 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,103
Number of Sequences: 5004
Number of extensions: 67748
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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