Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B02
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              240   1e-63
SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)                 31   1.5  
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)               30   2.5  
SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_40489| Best HMM Match : PA14 (HMM E-Value=0.24)                     29   5.9  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  240 bits (587), Expect = 1e-63
 Identities = 109/193 (56%), Positives = 143/193 (74%)
 Frame = +1

Query: 34  KPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKAT 213
           KPG EN  VTE +QK++  + CKPIEGMLSHQLK+  IDGEK+IIQNP+E QRK+H K  
Sbjct: 162 KPGAENSTVTELVQKVAESFKCKPIEGMLSHQLKRNVIDGEKAIIQNPNEQQRKDHSKCE 221

Query: 214 LEKYEVYAMDVLISTGEAVGREMDTRCTIYKKTDEVYQLKLKASRMFYSEVRNKHGNMPF 393
              +EVY +DVL+STG+   +E DTR T+YK+T  +Y LK+KASR+F+S+V NK   MPF
Sbjct: 222 FAVHEVYGVDVLVSTGDGKTKEKDTRTTVYKRTGNIYNLKMKASRVFFSDVCNKFTMMPF 281

Query: 394 NLRSFDKETSARLGVVECINHKLIEPFQVLYERPGELVAQFKFTALLLPSGTHRITGLPF 573
            LR+ + E  A++G+VEC  H+L+EPF VL+E+ GE VAQFKFT LL+P+G  RIT  PF
Sbjct: 282 TLRALEDEKKAKMGIVECAKHELMEPFNVLWEKEGEFVAQFKFTMLLMPNGNIRITQGPF 341

Query: 574 DKSQCKSERSIKD 612
           +    +SE  I+D
Sbjct: 342 EPDMIQSEHCIED 354


>SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)
          Length = 722

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +2

Query: 62  LKPFRK*VLNMVVSQLRVCSHTN*SSSVLMERRVLYKIHQKHSVKNMKKQHLKSMK 229
           L PF K ++N    Q +VC     SS  +ME+R   +I+Q  S+  +K   L++MK
Sbjct: 443 LSPFFKKMVNFTSDQRKVCFEKCSSSKPMMEKRRRARINQ--SLNELKILILEAMK 496


>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
          Length = 1481

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 274  REMDTRCTIYKKTDEVYQLKLKASRMFYSEVRNKHGNMPFNLRSFDKE 417
            R M  +  +YK+++E+ Q ++       SEV  ++ +M   L S ++E
Sbjct: 920  RSMQAQVDLYKQSEEMLQARVGELETSMSEVTGEYSHMQSELNSIEEE 967


>SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 37  PGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQN 174
           P  + + VTEAI ++      KPIE    HQ  + +I  + S  Q+
Sbjct: 11  PSRDCFLVTEAISQLRRPLDRKPIESAKKHQASKKQICAKSSTTQS 56


>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 109  EGMLSHQLKQFRIDGEKSIIQNP--SEAQRKEHEKATLEKYEVYAMDVLIST 258
            EG+L+H   Q+  D     IQN   ++   K H      KY + A D +I T
Sbjct: 1347 EGILNHTSAQYPKDAPHLFIQNAKVNDFNYKAHNALQGPKYSIKAHDTVIGT 1398


>SB_40489| Best HMM Match : PA14 (HMM E-Value=0.24)
          Length = 496

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = +1

Query: 307 KTDEVYQLKLKASRMFYSEVRNKHGNMPFNLRSFDKETSARLGVVECINHKLIEPFQVLY 486
           +++  Y + LKASR++Y ++ +K G++ F  R F      R+G  E       E  + L+
Sbjct: 201 ESERSYDVHLKASRLYYFDLIHKQGDLLF--RDF-INVQWRIGDSEVFTDIPSEYLKSLH 257

Query: 487 ERPGELVAQFKFTALLLPSGTH 552
           +   E+      T   LP+G H
Sbjct: 258 D-DTEISDNTVNTNTFLPTGLH 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,278,558
Number of Sequences: 59808
Number of extensions: 497634
Number of successful extensions: 1104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)