Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_B01
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    83   5e-17
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   4.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   6.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   7.9  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   7.9  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 37/86 (43%), Positives = 53/86 (61%)
 Frame = +1

Query: 511 VKLENFSTSWADGLAFCALLHHFLPDAFDYSKLTPERRRHNFTLAFKIADEKAGIYPLLD 690
           V +++F+ SW +GLAFCAL+H   PD  DY+KL  +  R N  LAF IA +  GI  L++
Sbjct: 144 VDVQDFTRSWTNGLAFCALIHQHRPDLLDYNKLDKKNHRANMQLAFDIAQKSIGIPRLIE 203

Query: 691 VEDMVTMRKPDWKCVFTYVQSIHRRF 768
           VED+  + +PD + + TYV      F
Sbjct: 204 VEDVCDVDRPDERSIMTYVAEYFHAF 229


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 634 FTLAFKIADEKAGIYPLLDVEDMVTMRKPDWKCVFTYVQSIHRRF 768
           F +  K    +A  YP ++   MV  R  D   V + + SI RRF
Sbjct: 84  FAIGCKNVAYEASQYPRMNATFMVLARNSDLDGVLSSMNSIERRF 128


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 547 GLAFCALLHHFLP 585
           GLA CA+ +HFLP
Sbjct: 408 GLALCAIAYHFLP 420


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 466 VPAAREAKLNKQSQNVKLENFSTSWADGLAFCALL 570
           +P      LNK S++V LE F  S  +    CAL+
Sbjct: 58  IPQLIHLVLNKDSESVALEEFIISQCEQNTQCALI 92


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 71  KYKILHGHCSP 39
           KY  LHGHCSP
Sbjct: 368 KYHKLHGHCSP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,630
Number of Sequences: 5004
Number of extensions: 50953
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)