Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A24
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 54 2e-08
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 53 3e-08
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 52 7e-08
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 48 9e-07
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 47 2e-06
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 44 2e-05
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 44 2e-05
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 43 3e-05
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 42 8e-05
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 41 1e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 40 4e-04
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 35 0.009
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 34 0.016
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 33 0.028
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 33 0.049
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.049
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 32 0.064
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 32 0.085
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 31 0.11
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 31 0.15
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.20
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 30 0.26
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.34
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 27 1.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.4
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 3.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.2
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 4.2
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.6
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.6
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 7.4
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 53.6 bits (123), Expect = 2e-08
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 201 PPPASKEAVQKLQDVV-IENQKKGCPICLKNLEAGEKVKKMP-CNHIFHPRCILTWLDKT 374
PP AS++ ++K V + C +CL N E ++ +++ CNH FH CI WL +
Sbjct: 501 PPVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSS 560
Query: 375 -NSCPFC 392
NSCP C
Sbjct: 561 QNSCPLC 567
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 53.2 bits (122), Expect = 3e-08
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 270 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL-DKTNSCPFCXHEMP 407
C ICL++ G+KV +PC H FH CI W+ D ++CP C E+P
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVP 367
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 52.0 bits (119), Expect = 7e-08
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Frame = +3
Query: 111 GXQPNHLLHXARFLIDSGLDRTGAAEWPSLPP--PASKEAVQKLQDVV--IENQKK---G 269
G QP F+I + G P P P K AV++ D + N +
Sbjct: 47 GTQPVAFSIGTMFIITPQANFEGGENDPFANPFQPPVKRAVKEAWDSFEPLSNDQLMDLT 106
Query: 270 CPICLKNL-EAGEK-VKKMPCNHIFHPRCILTWLDKTNSCPFCXHEMP 407
CPIC ++ E EK KMPC HIF C+ WL+ +CP C E+P
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 48.4 bits (110), Expect = 9e-07
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 183 AEWPSLPPPASKEAVQKLQ----DVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRC 350
A+ + P PA ++ + K++ + +++ C IC++ + + V ++PC H FH C
Sbjct: 363 AQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENC 422
Query: 351 ILTWLDKTNSCPFC 392
I WL +C C
Sbjct: 423 IKPWLRVNGTCAIC 436
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 47.2 bits (107), Expect = 2e-06
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 246 VIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN-SCPFCXHE 401
++E+++ C IC + + ++ +PC H+FH +CI TW+ SCP C +
Sbjct: 197 LLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 44.0 bits (99), Expect = 2e-05
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 273 PICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCXHE 401
P + + G ++ K+PC H FH C+ +W N+CP C E
Sbjct: 39 PASISSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTE 81
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 261 KKGCPICL-KNLEAGEKVKKMPCNHIFHPRCILTWLDKTNS-CPFCXHEMPTDDEN 422
++ C ICL + E +++PC+HIFHP CI +L K + CP C + EN
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLEN 550
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 270 CPICLKNLEAGEKVKKMP-CNHIFHPRCILTWLDK-TNSCPFC-XHEMPTDDE 419
C ICL+ G+ +K+ C H FH CI WL NSCP C H + T E
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTTQAE 818
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 41.9 bits (94), Expect = 8e-05
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 312 KKMPCNHIFHPRCILTWLDKTNSCPFC 392
K++PC HI H C+ WL++ +CP C
Sbjct: 324 KRLPCGHILHFHCLRNWLERQQTCPIC 350
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 41.1 bits (92), Expect = 1e-04
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 321 PCNHIFHPRCILTWLDKTNSCPFCXHEMP 407
PC+H++H +C+L W++ + CP C +P
Sbjct: 646 PCHHLYHRQCLLQWMETRSICPVCRCHLP 674
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 270 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCXHEMPT 410
CPIC EA ++ C H + C+L WL ++ SCP C ++ T
Sbjct: 85 CPICT---EALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYT 128
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 261 KKGCPICLKNLEAGEKVKKMPCNHI-FHPRCILTWLDKTNSCPFC 392
++ C ICL+ + G + + PC H F CI W+D++ +CP C
Sbjct: 18 RRDCVICLQ--KDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPIC 60
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 35.1 bits (77), Expect = 0.009
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 324 CNHIFHPRCILTWLDKTNSCPFCXHE 401
CNH FH CI WL+ N CP E
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNRE 99
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 34.3 bits (75), Expect = 0.016
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 216 KEAVQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLD---KTNSCP 386
KE K Q VV +Q+ C+ L++ E + PC HIF CIL+ L T CP
Sbjct: 186 KEEPSKKQ-VVPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCP 244
Query: 387 FCXHEM 404
C ++
Sbjct: 245 VCRRKV 250
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 33.5 bits (73), Expect = 0.028
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 201 PP--PASKEAVQKLQDVVIENQKKGCPICLKNL-EAGEKVKKMPCNHIFHPRCI-----L 356
PP PAS+E + + +KKGC C L E+G ++ C+ +H +C+
Sbjct: 1071 PPMEPASRETSPDSEGRLTIRKKKGCIFCFCRLPESGVMIECEICHEWYHAKCLKMSKKK 1130
Query: 357 TWLDKTNSCPFCXHEM 404
D+ +CP C + +
Sbjct: 1131 LRQDEKFTCPICDYRV 1146
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 32.7 bits (71), Expect = 0.049
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 252 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFC 392
E +K C +C++ + + C HIF CI W K + CP C
Sbjct: 251 EGNRK-CSLCMEFIHCPAATE---CGHIFCWSCINGWTSKKSECPLC 293
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 32.7 bits (71), Expect = 0.049
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +3
Query: 126 HLLHXARFLIDSGLDRTGAAEWPS-LPPPASKEAVQKLQDVVIENQKKGCPICLKNLEAG 302
H+LH + I ++ + ++ L P+SK ++ + C +CL+ +++
Sbjct: 162 HVLHIDKVNIKYPMESSDSSSTEQQLVGPSSKPFASTTPALI---ELPTCVVCLERMDSS 218
Query: 303 -EKVKKMPCNHIFHPRCILTWLDKTNSCPFCXH 398
+ + C H FH C+ W +SCP C +
Sbjct: 219 ITGLITIVCQHTFHCPCLQKW--GNSSCPVCRY 249
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 32.3 bits (70), Expect = 0.064
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 270 CPICLKNL-EAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFC 392
CPIC + + + E+V + C+H H RC ++ CP C
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 31.9 bits (69), Expect = 0.085
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Frame = +3
Query: 270 CPICLKNLEAGEKVKKM---PCNHIFHPRCILTWLDKTNS--CPFC 392
C IC L + C H FH C+ W +NS CP C
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLC 1603
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 189 WPSLPPPASKEAVQKLQDVVI----ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCIL 356
W P + +++Q++V+ E+ C ICL + + + PC+H +H +CI
Sbjct: 161 WKIKLSPYNLNEFKRMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCSHSYHYKCIR 220
Query: 357 TWLDKTN---SCPFC 392
L++++ SC C
Sbjct: 221 PTLNESHPYFSCFIC 235
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 31.1 bits (67), Expect = 0.15
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 324 CNHIFHPRCILTWLDKTNSCPFC 392
C H++ C+ WL ++SCP C
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPMC 1129
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 234 LQDVVIENQKKG--CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCXHEMP 407
++D++ EN + C IC L + V PC H F C++ L ++ CP C +P
Sbjct: 155 MEDLLQENVSRELECQICFGMLY--DPVVS-PCGHTFCGPCLMQALTQSPQCPTCRFGLP 211
Query: 408 T 410
+
Sbjct: 212 S 212
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 30.3 bits (65), Expect = 0.26
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 324 CNHIFHPRCILTWLDKTNSCPFCXHEMPT 410
C HIFH CI WL + S C + T
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDRQT 80
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Frame = +3
Query: 243 VVIENQKKGCPICLKNLEAGEKVKKM-PCNHIFHPRCILTW----LDKTNS----CPFC 392
V ++N+ C +C + + C H+FH CI W +++ N CP+C
Sbjct: 188 VELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYC 246
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 234 IFVLPLSMQAEVSLATPLHQFDLS 163
IF+ P S+Q + +ATP H F LS
Sbjct: 242 IFMAPKSLQYDFMIATPKHPFVLS 265
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 252 LLQHLVIFVLPLSMQAEVSLATPLHQF 172
++QH I + PLS+Q E LAT L +
Sbjct: 2342 VIQHFEINLFPLSLQIEQELATKLFAY 2368
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 315 KMPCNHIFHPRCILTWLDKTNSCPFC 392
K PC + +P C + K CPFC
Sbjct: 57 KAPCKAVLNPYCHIDTRAKFWICPFC 82
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +3
Query: 198 LPPPASKEAVQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN 377
+ P A+ ++ L+ + P + GE + + + + HPR LDKT+
Sbjct: 532 ISPDAALQSDGPLKKAKEPEESSITPTTPPSFNVGESLSRRSASPLQHPRTSPDMLDKTS 591
Query: 378 SC 383
C
Sbjct: 592 PC 593
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 270 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCP 386
CP+ L+ + + CNH + IL+ L+ T CP
Sbjct: 179 CPLTLQPIV--HPILSTACNHFYEKDAILSLLNPTCVCP 215
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 453 LVSLLSCRLHNFRHQ*ASHVYKTGMSLS 370
L+SL S +LH H AS V + G+SLS
Sbjct: 427 LISLSSKQLHPRHHNTASIVVQVGVSLS 454
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 388 FVXMRCLLMTKIMKPTRKQRNELNSHKMILMHYTIQCLVSSF--IIINFLGLLVIXGDIN 561
F + CL +T+++ TRK L S K ++F ++I LG+ +N
Sbjct: 297 FSMIACLRLTRLLNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLN 356
Query: 562 YKRLWL 579
+ +WL
Sbjct: 357 RQCVWL 362
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +3
Query: 315 KMPCNHIFHPRCILTWLDKTNSCPFCXHEMP 407
+ PC + +P C + + CPFC P
Sbjct: 57 RAPCRAVLNPYCHVDLRARFWICPFCFQRNP 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,382
Number of Sequences: 5004
Number of extensions: 48514
Number of successful extensions: 172
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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