Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A21
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 110 9e-26
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 108 3e-25
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 0.45
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.8
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 2.4
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 3.2
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.2
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 4.2
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 4.2
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 7.3
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 110 bits (264), Expect = 9e-26
Identities = 47/86 (54%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Frame = +1
Query: 70 KRLELLGKSGTRYGASLRKMVKKLEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 243
K++ + GK G RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K CK+
Sbjct: 6 KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKV 65
Query: 244 VAGGAWVFSTTAASSCRSAVRRLREV 321
+AGGAW +T AA+S RS +RRLRE+
Sbjct: 66 LAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 108 bits (260), Expect = 3e-25
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +1
Query: 70 KRLELLGKSGTRYGASLRKMVKKLEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 243
K++ + GK G RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K C +T
Sbjct: 6 KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKT 65
Query: 244 VAGGAWVFSTTAASSCRSAVRRLREV 321
+AGGAW +T AA+S RS +RRLRE+
Sbjct: 66 LAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 28.3 bits (60), Expect = 0.45
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 248 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSS 138
+T +L ++ Q+ T F+A + +NE +FA W TS+
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTSA 103
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 151 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 240
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 160 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 249
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 186 GCYETFLCRHLVL*AMQEDCSRRSLGILH 272
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 25.4 bits (53), Expect = 3.2
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = -3
Query: 224 QDQMPTQERFIASLPQNEQVYFACWVTSSFLTILRREAP*RVPDLPSNSNLFGTFGHFGK 45
+++ P Q S P+N ++ A ++ +F+ ++ P + P+ N +FG GK
Sbjct: 3 EEESPYQLTKTFSNPKNNKIGLAIFLIGAFINLIHIYKPKGPSNNPTKRNYHISFGPPGK 62
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 242 VLLHRLQDQMPTQERFIASLPQNEQV 165
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 31 LSRXGFPKWPNVPKRLELLGKSGTRYGASLRKMVKKL 141
L + F PN +RLE+L K R+ M+KKL
Sbjct: 765 LDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKL 801
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 200 RFIASLPQNEQVYFA 156
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,808
Number of Sequences: 5004
Number of extensions: 29311
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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