Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A21
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 114 3e-26
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 114 3e-26
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 1.8
07_01_0385 - 2871628-2872131 28 3.1
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 4.1
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 27 4.1
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 27 5.4
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 27 5.4
07_03_1237 + 25073010-25073513 27 7.1
11_01_0709 - 5821246-5821449,5821517-5821634,5821720-5821812,582... 26 9.4
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 114 bits (274), Expect = 3e-26
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +1
Query: 70 KRLELLGKSGTRYGASLRKMVKKLEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 249
K+ ++GK GTRYGASLRK +KK+EV+QH+KY C FCGK A+KR VGIW CK C + A
Sbjct: 31 KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKA 90
Query: 250 GGAWVFSTTAASSCRSAVRRLRE 318
GGA+ +T +A + RS +RRLRE
Sbjct: 91 GGAYTMNTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 114 bits (274), Expect = 3e-26
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +1
Query: 70 KRLELLGKSGTRYGASLRKMVKKLEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 249
K+ ++GK GTRYGASLRK +KK+EV+QH+KY C FCGK A+KR VGIW CK C + A
Sbjct: 36 KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKA 95
Query: 250 GGAWVFSTTAASSCRSAVRRLRE 318
GGA+ +T +A + RS +RRLRE
Sbjct: 96 GGAYTMNTASAVTVRSTIRRLRE 118
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 178 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 315
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 163 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 261
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 142 EVTQHAKYTCSFCGKDAM 195
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 49 PKWPNVPKRLELLGKSGTRYGASLRKMVKKLEVTQH 156
PK P + RL + +GT+ SLR++++ + + H
Sbjct: 63 PKPPGLAPRLRYVSPAGTKSYYSLRRLIQTIHLHHH 98
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 76 LELLGKSGTRYGASLRKMVKKLEVTQHAKYT 168
LEL G + +G +L + ++KLE+ H K T
Sbjct: 678 LELHGFNDANHGVALERALQKLELLGHLKLT 708
>07_03_0997 - 23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 112 HRNVCQICQVIPTFLGRLAILGNRXETKV 26
HR+ QVIP +LG L I ++ E KV
Sbjct: 1008 HRDGIDAAQVIPAWLGCLPIKDDKIEAKV 1036
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 196 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 291
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>11_01_0709 -
5821246-5821449,5821517-5821634,5821720-5821812,
5822065-5822198,5822281-5822559,5822645-5822730,
5822814-5822906,5822998-5823090,5823192-5823299,
5824034-5824060,5824538-5824766
Length = 487
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 65 SQKGWNYLANLAHVTVPLYVKWSKS 139
++K WN ++NL V P V WS S
Sbjct: 115 NKKSWNKVSNLLFVESPAGVGWSYS 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,822
Number of Sequences: 37544
Number of extensions: 197391
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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