Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A20
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0421 + 21990034-21990392,21991691-21992681 36 0.041
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 33 0.39
01_05_0796 - 25297792-25298514 29 3.6
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 29 6.3
11_06_0622 - 25600563-25600817,25601041-25601109,25601251-256014... 28 8.3
09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112 28 8.3
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 8.3
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 35.9 bits (79), Expect = 0.041
Identities = 39/143 (27%), Positives = 52/143 (36%)
Frame = +2
Query: 395 PAGRQ*GPGHAPTSSSSNACQLQHTDQ*NQGIGHRGLYVRGNPTGAMGSYKANAFRGSSV 574
PAG G + T +C H D G G GL P G MG A G S
Sbjct: 309 PAGAGAPAGGSATFGLGLSCLNTHQD--GGGGGGNGLI----PAGMMGHLARTASHGRSG 362
Query: 575 SSNSNDHTGRWFSRG*ERRICGYRMRNNRLSTSCCGMEKRRRSHGNSXASFXNKIQGEPP 754
+ G G R G R ++R G + H N+ A + PP
Sbjct: 363 EDVAG--AGGGGGDGMTRDFLGLRAFSHR-DILLAGFDSSCMGHVNAAAGMAG-YEPPPP 418
Query: 755 HAGRGLRVHRQQRRGEPGGRVNP 823
H G+ H+QQ++ + GG P
Sbjct: 419 HHGQPQHQHQQQQQQQQGGSNEP 441
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 32.7 bits (71), Expect = 0.39
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 615 EVKKGEFVDIGCETTGFPPPVVEWRKDGEVMEILXHRSXIRFKASHRMQAGAYECIA-NN 791
E +GE +D G ET PPV +DG + +L S + A + G E A N
Sbjct: 44 EALQGEVIDGGEETVNGTPPVENQTQDGAL--VLDDASGFQASAEQNVDEGPAEVAAKNE 101
Query: 792 GVGSPVAAS 818
G+ S + AS
Sbjct: 102 GLVSVIEAS 110
>01_05_0796 - 25297792-25298514
Length = 240
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/94 (24%), Positives = 37/94 (39%)
Frame = +2
Query: 416 PGHAPTSSSSNACQLQHTDQ*NQGIGHRGLYVRGNPTGAMGSYKANAFRGSSVSSNSNDH 595
P + +SSSS++C H D +Q + G ++ P G+ A+ G+ H
Sbjct: 68 PSSSSSSSSSSSCSDDHDDVHDQFLSFAGAHLPPLPAAITGAAAADQEEGAVFEDKQAVH 127
Query: 596 TGRWFSRG*ERRICGYRMRNNRLSTSCCGMEKRR 697
+R RR ++ R T E RR
Sbjct: 128 VTP--ARAAPRRSRSEKVGRGRRPTRAASPELRR 159
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 555 HSVEVQYPPTVMTIPDDGFLEVKKGEFVDIGCETTGFP 668
+++ Q PP+++ +P FL + +FV G + +G P
Sbjct: 280 NNITGQIPPSIVNLPSLTFLNLVANDFVIDGTDMSGLP 317
>11_06_0622 -
25600563-25600817,25601041-25601109,25601251-25601437,
25601575-25601688,25603581-25603714,25603818-25604336
Length = 425
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 413 GPGHAPTSSSSNACQLQHTDQ*NQGIGHRGLYVRGNPTGAMGSYKANA 556
GPG +P +S+ ++ T + + + RG+ + NP A KA A
Sbjct: 13 GPGSSPAASARSSKNAAVTGELPENLSVRGIVAKPNPPPAAMQVKAQA 60
>09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112
Length = 254
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +1
Query: 742 RRATACRPGLTSASPTTAW---GARWPRQS 822
RRAT RPG + TTAW RWP Q+
Sbjct: 39 RRAT--RPGTAPRTATTAWEVYNGRWPHQT 66
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 416 PGHAPTSSS-SNACQLQHTDQ*NQGIGHRGLYVRGNPTGAMGSYKANAFRGSSVSSNSND 592
P P SS+ Q + + +G GH G++ +G G + K N RGSS + D
Sbjct: 126 PDGTPFSSTWGEYIQNEENEGWYRGPGHEGMHCQGRRWGGIMKEKRNPKRGSSYMGSIYD 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,344,330
Number of Sequences: 37544
Number of extensions: 595173
Number of successful extensions: 1704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -