Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A19
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694...    30   2.1  
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659...    29   2.8  
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    29   2.8  
01_06_1100 + 34530132-34530485,34530544-34530705                       29   3.7  
03_06_0052 - 31295839-31295883,31296312-31296380,31296458-312965...    29   4.9  
01_06_0096 - 26408159-26408911,26409012-26409440                       29   4.9  

>01_06_0638 -
           30768546-30768779,30768908-30769017,30769301-30769490,
           30769842-30769914,30770007-30770063,30770147-30770211,
           30770278-30770488,30770568-30770650,30771123-30771158,
           30771611-30771713,30771813-30771899,30772210-30772403
          Length = 480

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 478 RLKSTFNYSKAPPRGWQDGKKDFTSKPTYTKF--HVFDENDPYGI*FHNIHLVKLVNIIM 651
           +LKS+++ SK PP     G    T    Y KF     ++++  G  FHNI L + + +  
Sbjct: 344 QLKSSYS-SKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCA 402

Query: 652 QIL 660
           Q+L
Sbjct: 403 QVL 405


>05_02_0100 +
           6594787-6594878,6595443-6595728,6595809-6595887,
           6595964-6596013,6597281-6597478,6597555-6597612,
           6598388-6598496,6599253-6599321,6599684-6599812,
           6599970-6600082,6600386-6600479,6602827-6602917,
           6604145-6604233,6604715-6604856,6605849-6606196,
           6606314-6607408
          Length = 1013

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 617 LWNQIPYGSFSSKTWN 570
           +WN IP G F+S+ WN
Sbjct: 285 IWNNIPSGDFASENWN 300


>03_01_0617 +
           4532651-4532893,4534713-4534939,4535077-4535150,
           4535753-4535809,4535940-4536280,4536979-4537047,
           4537152-4537219,4537404-4539569,4540101-4540178,
           4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = +1

Query: 67  NIFKIQEYSKTNQ*KNNQEMSRNVADAARKFLLLGQCVPTVKQNAAKIRVKRLELDENLL 246
           N+ +I + S  N  K   E +  ++ + RK ++L    P+VK  A  +    +E +   +
Sbjct: 129 NVQRILDESAKNLVKMRSEEAERLSKS-RKSIVLDPANPSVKSQAKSMAAAAVEGNMRRM 187

Query: 247 MYFRKEEFYYCHDSEKICKTGDI 315
            + +K+EFY  + +  I  T  +
Sbjct: 188 NWKQKKEFYKKNPAAVIAPTKSV 210


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 418 KKVSKEQYKEDIERQTELYGRLKSTFNYSKAPPRGW 525
           KK + +Q   D+  Q EL+  LKST      P + W
Sbjct: 121 KKPTGQQEARDVTNQLELFNELKSTLFSMSLPVKKW 156


>03_06_0052 -
           31295839-31295883,31296312-31296380,31296458-31296521,
           31296598-31296680,31297243-31297308,31297426-31297516,
           31298090-31298247,31298432-31298476,31299189-31299318,
           31300685-31300935
          Length = 333

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 247 MYFRKEEFYYCHDS-EKICKTGDIVLIQALPEKLTK 351
           M FRKE F+Y HD+ +++ K   ++  +AL   L K
Sbjct: 225 MIFRKEPFFYGHDNHDQLVKIAKVLGTEALNAYLNK 260


>01_06_0096 - 26408159-26408911,26409012-26409440
          Length = 393

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 356 INFVSFSGNAWIRTMSPVLHIFSESW 279
           IN + F G A +RT+SP+ H    +W
Sbjct: 264 INDIRFRGKAIVRTLSPMSHFEGGAW 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,841,226
Number of Sequences: 37544
Number of extensions: 321888
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)