Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A18
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.5  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.9  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 161 PVPSAVQVFSPDLDSAVADLTDPVLEAVAPTGQALEAAVLTGPASVVVASTAQEAE 328
           P+P + +  + D+  ++AD+T  V+E      Q +E   +     +V AST  E E
Sbjct: 136 PLPPSSEGPAVDIPPSMADITSKVIEGDGVFMQDVEINNVRNRYILVRASTLSEIE 191


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 330 GSASWAVEATTTEAGPVKTAASKAWPVGATASKTGSVKSATAESRSGLKTWTAEGTG 160
           G+ S      TT      TA +       TA+   S +S +  +R+G    T+ GTG
Sbjct: 139 GNHSSTTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTG 195


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 110 HA*PDRPNSVRLMLKRKPVPSAVQVFSPDL-DSAVADLTDPVLEAVAPTGQALEAAVLTG 286
           H+   +P     + K +P+ +   V S D   SA+++  +P  +    + QALE   LT 
Sbjct: 339 HSILQKPTDTSPLHKIEPISADELVESDDSRTSALSNSQNPSDDVENQSDQALEVLSLTN 398

Query: 287 PASVVVAS 310
           P  +  AS
Sbjct: 399 PPKIDNAS 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,115
Number of Sequences: 5004
Number of extensions: 22405
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)