Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A18
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 31 0.62
02_04_0602 - 24259703-24259918,24261663-24261821 30 1.1
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214... 29 3.3
08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429... 28 4.4
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 28 4.4
02_04_0279 + 21545317-21546192,21547331-21547667,21547795-21547931 28 4.4
02_03_0238 + 16730444-16730448,16730484-16730586,16732043-167320... 28 4.4
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 28 5.8
04_01_0290 + 3843610-3843712,3844088-3846003 28 5.8
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690... 28 5.8
10_01_0346 - 3828511-3828635,3829124-3829154,3829368-3830555 27 7.6
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 27 7.6
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 31.1 bits (67), Expect = 0.62
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = -2
Query: 417 SKLSSRYRIGARLG*SSSTDSDAL*NTNRGSASWAVEATTTEAGPVKTAASKAWPVGATA 238
S L++ RIG T +A R + S A + AGP ++ AW A
Sbjct: 73 SFLTNPSRIGRHFDEDERTPFEAASTPRRPAPSPPSFAPSPAAGPTRSGPGNAWGPRREA 132
Query: 237 SKTGSVKSATAESRSGLKTWTA 172
+ T + S A G + W+A
Sbjct: 133 APTAAPVSPAASGGGGGQIWSA 154
>02_04_0602 - 24259703-24259918,24261663-24261821
Length = 124
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 318 WAVEATTTEAGPVKTAASKAWPVGATASKTGSVKSATAESRSGLKTWTA 172
W + A+ + A PV AA+ P+GA+ + ++A R + W A
Sbjct: 5 WCLSASASAAAPVAAAAAAPGPLGASVASVSLARAAVPSRRR--RRWDA 51
>04_04_0352 +
24619621-24619757,24620102-24620411,24621022-24621429,
24621773-24622357
Length = 479
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 339 YFKEHRYQSRRISPV*LQFCSERIILNMHLHNKKM*FTSIIYK 467
YF + +S+ PV + + +ILNMHLH KK +I K
Sbjct: 186 YFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVK 228
>08_02_0685 +
20039318-20040433,20040574-20040982,20042906-20042973,
20043336-20043518,20043641-20043964,20045653-20045694
Length = 713
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 203 SAVADLTDPVLEAVAPTGQALEAAVLTGPASVVVASTAQEA 325
+AVA EAVA A+EAA +V VA TA EA
Sbjct: 113 AAVAKAAAEAAEAVAVAKVAVEAAAKEAATAVAVAKTAFEA 153
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 408 SSRYRIGARLG*SSS-TDSDAL*NTNRGSASWAVEATTTEAGPVKTAASK 262
SS R+G G +S+ L RG+A+W A EA PV S+
Sbjct: 20 SSTRRVGVGNGNASAHAGGGCLAGGRRGAAAWVARARVAEAPPVAAEGSR 69
>02_04_0279 + 21545317-21546192,21547331-21547667,21547795-21547931
Length = 449
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -2
Query: 333 RGSASWAVEATTTEAGPVKTAASKAWPVGATASK-TGSVK-SATAESRSGLKTWTA--EG 166
RG+ASWA A P + PVG S G V+ S T + T TA +G
Sbjct: 60 RGAASWAAFLLLAVAAPSAATLALPSPVGGGGSPFDGQVQVSLTLAAALAYLTLTALLQG 119
Query: 165 TGLRLSISLTEL 130
GLR + L L
Sbjct: 120 RGLRRLLYLDRL 131
>02_03_0238 +
16730444-16730448,16730484-16730586,16732043-16732099,
16732198-16732346,16732450-16732545,16732620-16732695,
16732810-16732883,16732991-16733408
Length = 325
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 333 RGSASWAVEATTTEAGPVKTAASKAWPVGATASKTGSVKSATAESRS 193
RG+A+ A TTT+ +++S ++ GA S+T + ++ S S
Sbjct: 220 RGNAALAAAETTTQLLTASSSSSSSYGHGAAGSRTAAETQRSSSSSS 266
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 185 FSPDLDSAVADLTDPVLEAVAPTGQ-ALEAAVLTGPASVVVASTAQEAEPRLVFQ 346
F P A L + VL A G A AVL GPA++V+ S + +V Q
Sbjct: 1951 FLPAAFCGKAKLNEEVLATTAAVGMIAHRFAVLPGPAAIVIGSGLALSSTAVVLQ 2005
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -2
Query: 351 AL*NTNRGSASWAVEATTTEAGPVKTAASKAWPVGATASK-TGSVKSATAESRSGLKTWT 175
+L N + SA A++ EA +K+ + A + G +K+A E +S +
Sbjct: 582 SLLNDEKNSAQKALDVEKVEAYKLKSKFEELENYKAEKDEEAGKLKAALEEKKSEIDVLI 641
Query: 174 AEGTGLRLSISLTELGRSGYACSCI 100
+ LRL+I+ + G SC+
Sbjct: 642 KDNELLRLAIAEAQEKNKGSILSCL 666
>03_06_0517 +
34466743-34466879,34468478-34468588,34468997-34469079,
34469287-34469404,34469503-34469714,34470167-34470651,
34470731-34470801,34470898-34470955,34471161-34471192,
34471193-34471449,34471820-34471974,34472353-34472636,
34472725-34472842,34473574-34473756,34473848-34474162
Length = 872
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 285 PVKTAASKAWPVGATASKTGSVKSATAESRSGLKTWTAEG 166
P++ A A + A + G ++ TA+ + WTAEG
Sbjct: 529 PLEMAEIHAPVIAADINDDGKIEMVTADVHGNVAAWTAEG 568
>10_01_0346 - 3828511-3828635,3829124-3829154,3829368-3830555
Length = 447
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 306 ATTTEAGPVKTAASKA-WPVGATASKTGSVKSATAESRSGLKTWTAEGTG--LRLSISL 139
A T A V+ S+ WP A++TG+ A + A+G G LR S++L
Sbjct: 253 ANTAAARAVEVRVSETGWPSAGDANETGATPQNAARYNGNVMRLVADGKGTPLRPSVAL 311
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 146 MLKRKPVPSAVQVFSPDLDSAVADLTDPVLEAVAPTGQALE 268
M+K P ++V S +LD+ VA L+ L +A G +L+
Sbjct: 1543 MMKHNQAPKWLRVSSTELDAVVASLSKKPLRNMAAGGISLD 1583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,032
Number of Sequences: 37544
Number of extensions: 159551
Number of successful extensions: 603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -