Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A18
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -2

Query: 330 GSASWAVEATTTEAGPVKT--AASKAWPVGATASKTGSVKSATAESRSGLKT 181
           GS   +  AT T  G   T  AAS      AT S   +  +ATA   +G  T
Sbjct: 209 GSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTT 260


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 421 CTYITKKCDLRVLYIR 468
           CTY TK C    L++R
Sbjct: 50  CTYATKYCHSLKLHLR 65


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 303 TTTEAGPVKTAASKAWPVGATASKTGSVKSATAESRSGLKTWT----AEGTGLRLS 148
           T  + GP K+ + ++      A +TG++ +  A    G+ + T    A   G+RL+
Sbjct: 455 TPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLA 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,689
Number of Sequences: 438
Number of extensions: 1636
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)