Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A17
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    38   0.002
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    28   1.6  
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   2.1  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.8  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   4.9  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   6.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   8.6  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   8.6  

>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/101 (25%), Positives = 45/101 (44%)
 Frame = +1

Query: 304 IKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 483
           I  L  ++K  W  L++EEKK  Y  +F +      +   +    V W  V       + 
Sbjct: 55  ITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQ--KTVFWGTVAGLTIGVVL 112

Query: 484 MAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 606
             +     +P P +++ E Q+   + M + K+NPI G AS+
Sbjct: 113 FGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEASE 153


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 363
           P   FR +  + K  RE++K +W+K   E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 289 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 432
           ED  + K  RE++K +W+K   E+K    +A   +   E++    EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 289 EDTPDIKALREKEKGDWRKLTLEEK 363
           ED  + K  RE++K +W+K   E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 289 EDTPDIKALREKEKGDWRKLTLEEK 363
           ED  + K  RE++K +W+K   E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162


>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 78

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = -3

Query: 305 MSGVSSRNRMAG--RGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPXP---GADRNT 141
           MS  S+ +   G  R KS   T L   L+   +H   P+   + FPV+P P   G + N 
Sbjct: 1   MSSNSNTDHSTGDNRSKSEKQTDLRNALRETESHGMPPLRGPAGFPVNPRPFSHGGNANL 60

Query: 140 DSIDERPAHQIVGHFD 93
           D ++ +    + G  D
Sbjct: 61  DRLNLKEPVDLEGPKD 76


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 296 VSSRNRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPXPGAD 150
           + SR+  +    S LST   W   P   H+   + +S++ P  P P A+
Sbjct: 385 LKSRHTSSDSSNSLLSTFRSWLFDPKQKHTADTLSSSAIRPRTPSPSAE 433


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 657 LASAVSNLLPAVV-FIIPLGCKSIDGVHLKVQHSLELSL 544
           LA  V ++L  V   I+P G K I  +HLK   S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 304 IKALREKEKGDWRK---LTLEEKKTLYR 378
           I+ALREK K    K   L LEEKKT Y+
Sbjct: 49  IEALREKAKEKKEKERILALEEKKTNYK 76


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 265 GSQACLHSWAGR*NHSLPTHGHQSWQVQCFQW 170
           GSQ C  +W+   N  + THG    QV  +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 119 PGAHQCYPCSCLRQGLDPLETLNLP 193
           P  +QCY C C R     LE  +LP
Sbjct: 414 PSKYQCYSCRCARN--SSLEFTSLP 436


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 737  ITFIILHRCLFS*IHDFFXTLQP-QSVYSPVRYQIYFQ 627
            +TF    +  F+ I+DF   L+  Q ++S +RY IY++
Sbjct: 1138 LTFYF-QKSYFNAIYDFLLKLKRFQELFSSIRYAIYYK 1174


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 427 WKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLAS 603
           WK + G  L +S   + I   +   VY P+ D  +   Q A L+R+ +      + +AS
Sbjct: 79  WKQLEGETLEISRYHSQIIGQIASQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMAS 137


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 514 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 621
           +P  +  ERQ   ++ +L+   +P+DG  ++ DY N
Sbjct: 27  LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,133
Number of Sequences: 5004
Number of extensions: 72651
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)