Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A17
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0133 - 1057679-1057880,1058112-1058377                           30   2.2  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    29   5.1  
03_06_0040 + 31240164-31241102,31241280-31241897                       28   6.8  
12_02_0538 + 20134594-20136042                                         28   9.0  
07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512...    28   9.0  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 28   9.0  

>03_01_0133 - 1057679-1057880,1058112-1058377
          Length = 155

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 508 CTQ--RLSWPCRSKQPKMRGLEPNQRLPSTLR 419
           CT+  RL WPCR  QP  +GL P  R    L+
Sbjct: 64  CTRGARLGWPCR--QPNTKGLHPWMRASELLK 93


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = -2

Query: 654 ASAVSNLLPAVVFIIPLGCKSIDGVHLKVQHSLELSLLPLFTQ*VRNRTVHKDFHGHV 481
           ASA+ N+LPAV F++ L  + ++ V LK  HS       LFT  V    +   +HG V
Sbjct: 105 ASALINVLPAVTFVMALVLR-MEKVKLKSVHSQAKIAGTLFT--VAGAVLMVLYHGPV 159


>03_06_0040 + 31240164-31241102,31241280-31241897
          Length = 518

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 517 PDSLSEERQKAQ-LQRMLDLKVNPIDGLASKWDY 615
           PD+ ++   +AQ L+ +LD ++NP+ G A+ WDY
Sbjct: 202 PDADTDMSMEAQELRHVLD-ELNPLIGAANLWDY 234


>12_02_0538 + 20134594-20136042
          Length = 482

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -2

Query: 687 LLYTTTPKCLLA---SAVSNLLPAVVFIIPLGCKSIDGVHL 574
           L Y T  K L++   ++  N+  + + ++ +GCK++ G+HL
Sbjct: 115 LAYLTDCKKLVSLRLNSAKNITSSGLLVVAIGCKNLSGLHL 155


>07_03_0284 +
           16249497-16249993,16250950-16251069,16251166-16251298,
           16251867-16252031,16253289-16253459
          Length = 361

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = -2

Query: 732 IYYLTQMFILINTRFLLYTTTPKCLLASAVSNLLPAVVFII 610
           +Y+L+ +F+  +  F+++     C++  AV   LP ++ I+
Sbjct: 204 LYWLSIVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAIL 244


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 58  CDFRTIQAQFFQSKWPTI*CAGRSSMLSVFLSAPGXGSTGNTELAKIGDREWVGYG 225
           C FRT+  +F +S W       R S L+V LS      + N +L +I D+ W+  G
Sbjct: 758 CQFRTVGQEFTKSGWGF--AFQRDSPLAVDLSTAILTLSENGDLQRIHDK-WLSPG 810


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,835,730
Number of Sequences: 37544
Number of extensions: 507918
Number of successful extensions: 1323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)