Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A14
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.61 
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   9.9  

>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = -2

Query: 445 VFKVGIVNCVFLIH------LFPMV*G---LVCFPNYQYPIFVFLHM 332
           V+ VG V+C FL+H       FP++     +   PN+Q+P+F F+ +
Sbjct: 44  VYLVGQVDCRFLLHHNAKNKQFPLIFVTNFITSLPNFQFPLFFFVSL 90


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 506 LYHVLFITFIAFHTSLKKLQCI*GRHS*LCFFDSFISHGLGPRLFSQLSISNFC 345
           ++ V+  TF    +   K Q   G  S    FD FI   L PR+     I  FC
Sbjct: 145 VFSVVLCTFCYVQSFFGKQQLAKGGTSGNILFDWFIGRSLNPRI-GNFDIKCFC 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,246
Number of Sequences: 5004
Number of extensions: 72071
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)