Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A14
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0626 + 9950100-9950269,9950387-9950516,9950616-9950684           33   0.28 
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595           28   7.8  

>03_02_0626 + 9950100-9950269,9950387-9950516,9950616-9950684
          Length = 122

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
 Frame = +1

Query: 175 YGVPFILFVVGGSFGL-----------REWTQIRYQFSQVKGVSKEEAEKMGLHREKTVS 321
           YG+P I   V G+ GL           +E   + ++  +            G ++ K +S
Sbjct: 35  YGLPLISLTVFGAVGLAHLIQGSKEVTKEKEDMEWEVVETTKALSRTGPVEGAYKPKKLS 94

Query: 322 LDTAYEEIQ-KLDIDNWENKRGPRPWE 399
           L+   + +Q K+DI+N++ KR PRP E
Sbjct: 95  LEDELKALQQKVDINNYDYKRIPRPNE 121


>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
          Length = 904

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -2

Query: 169 KCCACLRQ-LMDCGXWR 122
           +CC CLR+ L  CG WR
Sbjct: 785 RCCCCLRRRLWKCGCWR 801


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,248,995
Number of Sequences: 37544
Number of extensions: 414211
Number of successful extensions: 768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)